Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13e24
(578 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 69 5e-12
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 69 5e-12
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 53 2e-07
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 53 2e-07
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 51 1e-06
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 47 2e-05
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 42 6e-04
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 41 0.001
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 41 0.001
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 39 0.006
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 38 0.013
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 37 0.017
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 36 0.052
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 36 0.052
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 36 0.052
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 36 0.052
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 35 0.069
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 35 0.069
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 35 0.069
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 35 0.092
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 34 0.12
M38643-2|AAA28940.1| 192|Drosophila melanogaster protein ( D.me... 30 2.6
BT010287-1|AAQ23605.1| 831|Drosophila melanogaster LD40663p pro... 30 2.6
AE013599-2854|AAF57580.2| 831|Drosophila melanogaster CG7417-PA... 30 2.6
AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA... 29 4.5
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 68.9 bits (161), Expect = 5e-12
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = -3
Query: 576 PFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLS 397
P +I GDFN H WGS +N G +D L +LN SPT + + IDL+
Sbjct: 125 PSLITGDFNGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFS-THNTYTHIDLT 183
Query: 396 ICTPQLASSLSWSTLCSTYNSDHYPIIIS-FP 304
+C+P LA W L + SDH+PII + FP
Sbjct: 184 LCSPILAPHAKWKILNDLHGSDHFPIITTLFP 215
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 68.9 bits (161), Expect = 5e-12
Identities = 34/86 (39%), Positives = 52/86 (60%)
Frame = -3
Query: 570 MILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSIC 391
++LGD NS WGS +N+ G ++ ++ SL +LN GSPT L+ + ID+S+
Sbjct: 131 ILLGDLNSWSPLWGSPRTNTRGKKIETVILENSLIVLNDGSPTHLS-THNTFTHIDISLI 189
Query: 390 TPQLASSLSWSTLCSTYNSDHYPIII 313
+PQ+A SWS + + SDH+PI I
Sbjct: 190 SPQIAHMCSWSISDNLHGSDHFPITI 215
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 134 SDAPSSLNLTFTLVELKGVLNHVKDSAPGEDGIPYSFLSHL 12
S + +SL+ FTL+E++ + K +PG D + Y L +L
Sbjct: 427 SPSATSLDSNFTLLEIENSVAKAKGKSPGADRVSYPMLKNL 467
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/92 (29%), Positives = 45/92 (48%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSI 394
F+I GDFNS H +W + +N +G L ++ D+ IL PT + A L +
Sbjct: 156 FLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPH-NHKAKASTLDL 214
Query: 393 CTPQLASSLSWSTLCSTYNSDHYPIIISFP*N 298
C + + L+ + +SDH P++I + N
Sbjct: 215 CLTNIPNQLANPAVMQELSSDHLPVVIKYSTN 246
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/92 (29%), Positives = 45/92 (48%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSI 394
F+I GDFNS H +W + +N +G L ++ D+ IL PT + A L +
Sbjct: 104 FLICGDFNSRHRAWKCTRANGWGKILNELSDLGKFSILYPTQPTYIPH-NHKAKASTLDL 162
Query: 393 CTPQLASSLSWSTLCSTYNSDHYPIIISFP*N 298
C + + L+ + +SDH P++I + N
Sbjct: 163 CLTNIPNQLANPAVMQELSSDHLPVVIKYSTN 194
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 51.2 bits (117), Expect = 1e-06
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLT-KPGEVISAIDLS 397
+++ GD+N+ H WG + ++ G EL + L + IL +GSPTR P S ID +
Sbjct: 133 YLVGGDWNARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFA 192
Query: 396 ICTPQLASSLSWSTLCSTYNSDHYPIIIS 310
+ + L+ T +SDH P+IIS
Sbjct: 193 V-YHGIPDHLATITQSWDLDSDHLPLIIS 220
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 47.2 bits (107), Expect = 2e-05
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = -3
Query: 576 PFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSG-SPTRLTKPGEVISAIDL 400
P +I GD N+ T WGS +SN+ G ++D +++ L +LN G PT G S ID+
Sbjct: 119 PTVIGGDLNAWATEWGSRISNTRGRAVIDAMNLLDLVLLNDGFKPTFNNDRG--TSFIDV 176
Query: 399 SICTPQLASSLSWSTLCSTYNSDH 328
+ + L + +W SDH
Sbjct: 177 TFVSRVLVAGSNWMVHEDITLSDH 200
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 41.9 bits (94), Expect = 6e-04
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLD--ILDMYSLCILNSGSPTRLTKP-GEVISAID 403
F+ GD+N+ HT WGS + N G +L I L ++ GSPT ++ ID
Sbjct: 132 FIAAGDYNAKHTHWGSRLVNPKGKQLYKTIIKATNKLDHVSPGSPTYWPSDLNKLPDLID 191
Query: 402 LSICTPQLASSLSWSTLCSTYNSDHYPIII 313
++ T ++ SL + +SDH P++I
Sbjct: 192 FAV-TKNISRSLVKAECLPDLSSDHSPVLI 220
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDM--YSLCILNSGSPTRL-TKPGEVISAID 403
F+ GD+N+ HT WGS + + G +L + L L ++ G PT P ++ ID
Sbjct: 131 FIAAGDYNAKHTHWGSRLVSPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLID 190
Query: 402 LSICTPQLASSLSWSTLCSTYNSDHYPIIIS 310
+I T + ++ + + +SDH P+ ++
Sbjct: 191 FAI-TKHVPRNMVTAEALADLSSDHSPVFLN 220
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDM--YSLCILNSGSPTRL-TKPGEVISAID 403
F+ GD+N+ HT WGS + G +L + L L ++ G PT P ++ ID
Sbjct: 131 FIAAGDYNAKHTHWGSRLVTPKGKQLYNALTKPENKLDYVSPGKPTYWPADPRKIPDLID 190
Query: 402 LSICTPQLASSLSWSTLCSTYNSDHYPIIIS 310
+I T + ++ + + +SDH P+ ++
Sbjct: 191 FAI-TKHVPRNMVTAEALADLSSDHSPVFLN 220
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 38.7 bits (86), Expect = 0.006
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVISA-IDLS 397
F++ GD+N+ H WG+ SN G L +++ + L +G PTR ID +
Sbjct: 132 FIVAGDWNASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPYGCRGSPGYIDFA 191
Query: 396 ICTPQLASSLSWSTLCSTYNSDHYPIIIS 310
+ L + S + +SDH P++I+
Sbjct: 192 LTKGVLGIHANISAVVE-LSSDHLPLVIT 219
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 37.5 bits (83), Expect = 0.013
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Frame = -3
Query: 570 MILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDLS 397
++ GD+N+ H WG + G L D + S+ I+ +GS T + SAID S
Sbjct: 161 ILCGDWNAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFS 220
Query: 396 ICTPQLASSLSWSTLCSTYNSDHYPIII 313
IC +L + + +SDH PI++
Sbjct: 221 IC-KRLGRYEKRISSSAHLSSDHLPILL 247
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 37.1 bits (82), Expect = 0.017
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLT-KPGEVISAIDLS 397
F+ GD+N+ H WG+ S G L +++ +L +G PT + P SA+D
Sbjct: 133 FIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPTFYSYNPLLTPSALDFF 192
Query: 396 ICTPQLASSLSWSTLCSTYNSDHYPII 316
I L TL +SDH PI+
Sbjct: 193 ITCGYGMGRLDVQTL-QELSSDHLPIL 218
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 35.5 bits (78), Expect = 0.052
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 400
F++ GD+N+ H WG + + G L + + + I+ +G T + SAID
Sbjct: 32 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 91
Query: 399 SIC--TPQLASSLSWSTLCSTYNSDHYPIIISFP*NTCYCHMAK 274
SIC +L +S S + +SDH PI++ +T + K
Sbjct: 92 SICKGLGRLEKRISSS---ADLSSDHLPILLEINLDTSTLFLQK 132
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.5 bits (78), Expect = 0.052
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 400
F++ GD+N+ H WG + + G L + + + I+ +G T + SAID
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 399 SIC--TPQLASSLSWSTLCSTYNSDHYPIIISFP*NTCYCHMAK 274
SIC +L +S S + +SDH PI++ +T + K
Sbjct: 208 SICKGLGRLEKRISSS---ADLSSDHLPILLEINLDTSTLFLQK 248
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 35.5 bits (78), Expect = 0.052
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 400
F++ GD+N+ H WG + + G L + + + I+ +G T + SAID
Sbjct: 110 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 169
Query: 399 SIC--TPQLASSLSWSTLCSTYNSDHYPIIISFP*NTCYCHMAK 274
SIC +L +S S + +SDH PI++ +T + K
Sbjct: 170 SICKGLGRLEKRISSS---ADLSSDHLPILLEINLDTSNLFLQK 210
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 35.5 bits (78), Expect = 0.052
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 400
F++ GD+N+ H WG + + G L + + + I+ +G T + SAID
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 399 SIC--TPQLASSLSWSTLCSTYNSDHYPIIISFP*NTCYCHMAK 274
SIC +L +S S + +SDH PI++ +T + K
Sbjct: 208 SICKGLGRLEKRISSS---ADLSSDHLPILLEINLDTSNLFLQK 248
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.1 bits (77), Expect = 0.069
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSPTRLT-KPGEVISAIDL 400
F++ GD+N H WG+ +S + G L IL L I+ +G T + SA+D
Sbjct: 152 FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDF 211
Query: 399 SICTPQLASSL-SWSTLCSTYNSDHYPIII 313
+IC L ++ST +SDH PI I
Sbjct: 212 AICKGFHTQKLKTYST--DELSSDHLPIQI 239
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.1 bits (77), Expect = 0.069
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSPTRLT-KPGEVISAIDL 400
F++ GD+N H WG+ +S + G L IL L I+ +G T + SA+D
Sbjct: 152 FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDF 211
Query: 399 SICTPQLASSL-SWSTLCSTYNSDHYPIII 313
+IC L ++ST +SDH PI I
Sbjct: 212 AICKGFHTQKLKTYST--DELSSDHLPIQI 239
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.1 bits (77), Expect = 0.069
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYEL-LDILDMYSLCILNSGSPTRLT-KPGEVISAIDL 400
F++ GD+N H WG+ +S + G L IL L I+ +G T + SA+D
Sbjct: 152 FILGGDWNCKHRLWGNYLSCARGRSLSQSILARKDLDIVATGHATHFPFDKKKQPSALDF 211
Query: 399 SICTPQLASSL-SWSTLCSTYNSDHYPIII 313
+IC L ++ST +SDH PI I
Sbjct: 212 AICKGFHTQKLKTYST--DELSSDHLPIQI 239
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 34.7 bits (76), Expect = 0.092
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 400
F++ GD+N+ H WG + + G L + + + I+ +G T + SAID
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 399 SICTPQLASSLSWSTLCSTYNSDHYPIIISFP*NTCYCHMAK 274
SIC L + + +SDH PI++ +T + K
Sbjct: 208 SIC-KGLGRLEKRISSVADLSSDHLPILLEINLDTSTLFLQK 248
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 34.3 bits (75), Expect = 0.12
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC-ILNSGSPTRLT-KPGEVISAIDL 400
F++ GD+N+ H WG + + G L + + S I+ +G T + SAID
Sbjct: 148 FILCGDWNAKHRQWGCTRACQRGTALYEAVQADSTAEIIATGCATHFPHDTRKNPSAIDF 207
Query: 399 SICTPQLASSLSWSTLCSTYNSDHYPIII 313
SIC L + + +SDH PI++
Sbjct: 208 SIC-KGLGRFEKRISSGADLSSDHLPILL 235
>M38643-2|AAA28940.1| 192|Drosophila melanogaster protein (
D.melanogaster mobileelement jockey gag-specific protein
gene, complete cds.).
Length = 192
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 573 FMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPT 442
F+ GD+N+ H WG+ S G L +++ +L +G PT
Sbjct: 133 FIAGGDYNAKHAWWGNPRSCPRGKMLQEVIAHGQYQVLATGEPT 176
>BT010287-1|AAQ23605.1| 831|Drosophila melanogaster LD40663p
protein.
Length = 831
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 182 PSAPLNDPILSYKQYNSDAPSSLNLT 105
P+AP++ P+ + Q++S AP+S LT
Sbjct: 660 PAAPISQPVQDFGQHHSSAPTSACLT 685
>AE013599-2854|AAF57580.2| 831|Drosophila melanogaster CG7417-PA
protein.
Length = 831
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 182 PSAPLNDPILSYKQYNSDAPSSLNLT 105
P+AP++ P+ + Q++S AP+S LT
Sbjct: 660 PAAPISQPVQDFGQHHSSAPTSACLT 685
>AE014134-3392|AAF53993.2| 241|Drosophila melanogaster CG2042-PA
protein.
Length = 241
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 561 GDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSGSPTRLTKPGEVIS 412
GD+N+ H WG+ N G L +++ + L +G P R + + ++
Sbjct: 57 GDWNTSHWLWGAERCNRRGRALANLVLSTGMSSLVTGGPKRFQEAVDTLT 106
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,718,349
Number of Sequences: 53049
Number of extensions: 495489
Number of successful extensions: 1066
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2296745289
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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