Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e24
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    56   2e-08
Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF251126-1|AAF71273.1|  487|Caenorhabditis elegans UDP-GlcNAc:a-...    27   9.6  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
 Frame = -3

Query: 570 MILGDFNSHHTSWGSSVS-NSYGYELLDILDMY-SLCILNSGSPTRLTKPGEVISAIDLS 397
           +I GD N+HH++W S  S ++ G EL +++D++  L I N    TR       IS+ D++
Sbjct: 35  IISGDVNAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRADTYS--ISSPDIT 92

Query: 396 ICTPQLASSLSWSTLCSTYNSDHYPI 319
           ICT  LA+   WSTL     SDH P+
Sbjct: 93  ICTADLATKCHWSTLYK-LGSDHIPM 117


>Z81458-3|CAB03823.2|  487|Caenorhabditis elegans Hypothetical
           protein C03E10.4 protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 368 REDANWGVQMDRSMALITSPGFVRRVGEPEFKMHRLYMSKISNNS 502
           +E+  WG   DR +  I     VR   +    +H+L  SKI  +S
Sbjct: 433 KENGGWGDIRDRQLCEINKSPLVRVSSQSASVLHKLLNSKIQFSS 477


>AF251126-1|AAF71273.1|  487|Caenorhabditis elegans
           UDP-GlcNAc:a-6-D-mannoside
           b1,2-N-acetylglucosaminyltransferase II protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 368 REDANWGVQMDRSMALITSPGFVRRVGEPEFKMHRLYMSKISNNS 502
           +E+  WG   DR +  I     VR   +    +H+L  SKI  +S
Sbjct: 433 KENGGWGDIRDRQLCEINKSPLVRVSSQSASVLHKLLNSKIQFSS 477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,096
Number of Sequences: 27780
Number of extensions: 261946
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)