Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e24
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   8.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   8.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   8.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   8.8  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   8.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   8.8  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   8.8  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 387 PQLASSLSWSTLCSTYNSDHY 325
           P++ SSLS +   S YN+++Y
Sbjct: 79  PKIISSLSNNYNYSNYNNNNY 99


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 387 PQLASSLSWSTLCSTYNSDHY 325
           P++ SSLS +   S YN+++Y
Sbjct: 79  PKIISSLSNNYNYSNYNNNNY 99


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 387 PQLASSLSWSTLCSTYNSDHY 325
           P++ SSLS +   S YN+++Y
Sbjct: 79  PKIISSLSNNYNYSNYNNNNY 99


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 387 PQLASSLSWSTLCSTYNSDHY 325
           P++ SSLS +   S YN+++Y
Sbjct: 79  PKIISSLSNNYNYSNYNNNNY 99


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 387 PQLASSLSWSTLCSTYNSDHY 325
           P++ SSLS +   S YN+++Y
Sbjct: 79  PKIISSLSNNYNYSNYNNNNY 99


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 387 PQLASSLSWSTLCSTYNSDHY 325
           P++ SSLS +   S YN+++Y
Sbjct: 79  PKIISSLSNNYNYSNYNNNNY 99


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 114 KSNFYVSGVKRCIKSRQRQCSR 49
           +  F    V  CI SR  QC R
Sbjct: 163 EEQFATGRVLACISSRPGQCGR 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,179
Number of Sequences: 438
Number of extensions: 3413
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)