Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13e16
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 30 0.28
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch... 27 3.5
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 26 4.6
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 26 6.1
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 26 6.1
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 26 6.1
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 8.1
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.1
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos... 25 8.1
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 30.3 bits (65), Expect = 0.28
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = -3
Query: 679 CASVLTISNWGVPFLLTNSAVCFTRYLRLPFP---NSTRICSTVVSR*LYGHFISTGIHV 509
CA+V T SNW FL++ T + + S +C+++V+ L+ H S G+ +
Sbjct: 403 CAAVATTSNWLWNFLISFFTPFITNSIGFKYGYIFASCNLCASIVTF-LFAH-ESKGLTL 460
Query: 508 PSAREKYASGEA--ACKPNELKNMPQSKTV 425
E Y S +P L M ++K V
Sbjct: 461 EEINELYLSDAKPWMSRPKNLSEMAEAKEV 490
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.5
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +3
Query: 138 SRWRSNKDI-HPKPLDRAEILRVEKATRGQSKNELWTLLRLDRXXXXXXXXXXGNMLQRP 314
S + S+ D+ H K L+++EIL ++ RGQ + +L + L + L
Sbjct: 190 SEFVSHLDMYHSKLLNKSEILSTKRVNRGQDQFDL-SSFPLLKVFSSVFKVAYSKALLDA 248
Query: 315 ALLFGNAQESHVKETNGIMLDHMREIIKNKITSAVVE 425
LF + E+ + E GI+++ + E K + +VV+
Sbjct: 249 EKLFPSIDEAAIAEDIGILIEDL-ESDACKFSHSVVD 284
>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 213 WPFRHVKSLHDPKVLDEYLCLNANETT 133
WP +KS+ P + +CL NE+T
Sbjct: 156 WPLNIIKSIGLPSQIKRKICLQLNEST 182
>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 237
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 544 LYGHFISTG---IHVPSAREKYASGEAACKPNELKNMPQSKTVSTTAL 410
LY + S G IH PS Y + + KP +LKN+ S + ++
Sbjct: 98 LYQNVSSCGFRDIHRPSKPRHYLAHKVMAKPGKLKNILGSNVIDVNSI 145
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 327 GNAQESHVKETNGIMLDHMREIIKNKITSAVVETVLDCGMFFSSLGLHAASPDA 488
G ++ +E + ++L M+EI + K+ V + V+ +FS AA+ DA
Sbjct: 111 GEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSD-SQRAATKDA 163
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 523 WK*NVRTITETRPWSRCVSSWGT 591
WK + RT+ ET PW R +SS T
Sbjct: 352 WKESTRTVFETVPW-RILSSQAT 373
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 195 KSLHDPKVLDEYLCLNANETTALDSTRSFSHNC 97
KS H ++LD+ L+ T D+T F NC
Sbjct: 78 KSHHRHQLLDQNSELSQENLTKCDTTHDFEKNC 110
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +3
Query: 303 LQRPALLFGNAQESHVKETNGIMLDHMREIIKNKITSAVVETV 431
++ P LFG ++E+ ++ ++ E I+N++ + VET+
Sbjct: 136 MKEPIRLFGESEEATIQRYYSLLKYKKLEEIENELLTKGVETI 178
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 8.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 222 VPWWPFRHVKSLHDPK 175
+PW P +H+K HD K
Sbjct: 259 IPWPPNQHIKFAHDDK 274
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = -2
Query: 605 ILAIAVPQLDTHLLHGRVSVIVRTFYFHRNPRSVGERKIRIGRSGVQTQRAKEHAAIQNR 426
++ A L+ HG V ++ F R+P + K+ RS ++ R + + +R
Sbjct: 106 VVGEASVSLEDIFTHGTVESVIPLFMKKRHPEAYLRIKLVYTRSKRKSARKHKVPSSFHR 165
Query: 425 FNDRARNFIFYN 390
F+ R I YN
Sbjct: 166 FSGRRGLGIHYN 177
>SPCC737.04 |||S. pombe specific UPF0300 family protein
6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 444 MFFSSLGLHAASPDAYFSLADG---TWIPVEIKCPYNYRDTTVE 566
+F S+G HA + LA+ T +PVE++CP+ R E
Sbjct: 297 LFMLSIGNHARAFPIQNYLANTVMETVLPVELRCPFLSRSVDCE 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,704
Number of Sequences: 5004
Number of extensions: 64765
Number of successful extensions: 197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -