Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e16
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    26   0.40 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.6  

>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -1

Query: 345 DFLVRFQTKALVVVTCCRTNWTMQTLCCDPNAIASTAHFCFVPW 214
           DFL+ F     +V+ C    W +  L C   A+  +   C   W
Sbjct: 64  DFLMMFCMSPPMVINCYYETWVLGPLFCQIYAMLGSLFGCGSIW 107


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = -1

Query: 345 DFLVRFQTKALVVVTCCRTNWTMQTLCCDPNAIASTAHFCFVPW 214
           +FL+ F     +V+ C    W +  L C   A+  +   C   W
Sbjct: 98  NFLMMFCMSPPMVINCYYETWVLGPLFCQIYAMLGSLFGCGSIW 141


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +1

Query: 163 FIQNLWIVQRFYVSKR 210
           FI+N+W+   F+V+++
Sbjct: 89  FIKNIWVPDTFFVNEK 104


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +1

Query: 163 FIQNLWIVQRFYVSKR 210
           FI+N+W+   F+V+++
Sbjct: 89  FIKNIWVPDTFFVNEK 104


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +1

Query: 163 FIQNLWIVQRFYVSKR 210
           FI+N+W+   F+V+++
Sbjct: 28  FIKNIWVPDTFFVNEK 43


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 470 RRFARCVFFSRRRNVDS--GGNKMSVQLPRHDRGADACRVGERQSQVS 607
           + + +C+  + R  V S  GG K    LP      D+ ++GE Q  V+
Sbjct: 38  KEYNQCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVT 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,444
Number of Sequences: 438
Number of extensions: 4573
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)