Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e14
         (583 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    25   0.62 
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    25   0.62 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   5.8  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 332 VLRTILKV*HFLQITLEFRR 273
           +LR +LKV HF  IT  FR+
Sbjct: 5   LLRLVLKVGHFFAITPGFRK 24


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 332 VLRTILKV*HFLQITLEFRR 273
           +LR +LKV HF  IT  FR+
Sbjct: 5   LLRLVLKVGHFFAITPGFRK 24


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 371 YFQQWKQRLQDRLHHVPEPPERTD 442
           +F +W+Q L   L+H P   E TD
Sbjct: 652 FFPRWRQTLAMWLNHNPNYAEVTD 675


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 287 LEFRRFCTLHYFCLNPIHLNRSL 219
           LE  ++  + YFC   ++LN ++
Sbjct: 324 LEIEKYYNILYFCRIMVYLNSAI 346


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,169
Number of Sequences: 336
Number of extensions: 2687
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)