Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e14
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    27   2.6  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   3.5  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    25   8.1  

>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 410 HHVPEPPERT-DIRHNIVMYALNERGPVMPEDENKIVYHQIY 532
           H+VP PPE T +I  N    A+ +  P    D   +   ++Y
Sbjct: 459 HYVPPPPESTVEIVSNAPTLAMEDVQPTAASDTMALAPQEVY 500


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 312 SLTFFTNNVRVSSILYTPLFLFKSNTFKSF 223
           SL++FTNN+   + L TP  L  S +F +F
Sbjct: 561 SLSYFTNNISSVAGLETPSKLPMSKSFDTF 590


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = -2

Query: 474 FNAYMTMLWRMSVRSGGSGT---WCSLSCNRCFHC*KYSVHSC*YSPRCMSFTYN 319
           FN + TM+    V   GS     WC +SC R      +S     Y+P  +S  ++
Sbjct: 626 FNEHGTMVLGSGVYRIGSSVEFDWCGVSCARTLRKLGHSTIMVNYNPETVSTDFD 680


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,031
Number of Sequences: 5004
Number of extensions: 40670
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)