Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e14
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99280-2|CAE18017.1|  129|Caenorhabditis elegans Hypothetical pr...    31   0.60 
AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA ...    28   5.6  
AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line hel...    28   5.6  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    27   9.7  

>Z99280-2|CAE18017.1|  129|Caenorhabditis elegans Hypothetical
           protein Y57G11B.6 protein.
          Length = 129

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 419 PEPPERTDIRHNIVMYALNERGPVMPEDENKIVYHQIYPFVSH 547
           P PP  T   HN  M +L  R P  P +E    Y  IYP +++
Sbjct: 85  PSPPS-TAQHHNSTMSSLPPRRPSAPSEETPPPYSSIYPTLTN 126


>AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA
           helicase-3 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 47  RYKILNNAKGLLQLMFNYVYVEYYLDYKRTPKSTKILNMLFN 172
           RY +L+ A  ++  M     +E  ++YK  PK+ K   M+F+
Sbjct: 451 RYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFS 492


>AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line
           helicase protein 3 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 47  RYKILNNAKGLLQLMFNYVYVEYYLDYKRTPKSTKILNMLFN 172
           RY +L+ A  ++  M     +E  ++YK  PK+ K   M+F+
Sbjct: 451 RYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFS 492


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 96
           protein.
          Length = 206

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 338 QRGEYQQEWTEYFQQWKQRLQDRLHHVPEPPERTD 442
           Q+G+YQQ   + +Q  +Q+ Q      P  P   D
Sbjct: 47  QQGQYQQPSGQQYQSMQQQFQSPQQQAPTQPTHPD 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,092
Number of Sequences: 27780
Number of extensions: 240643
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)