Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e14
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   3.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.9  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 271 NRRNSNVICKKCQTFKIVRKTHATRRVS 354
           +RRN  V+ K  +T + +      RR+S
Sbjct: 335 DRRNIEVVAKNKETLQAITGLKVKRRIS 362


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 73  FGIVQNFVSHQIINNFHHRH 14
           F +  + VS  +I N+HHR+
Sbjct: 303 FMVASSVVSTILILNYHHRN 322


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 353 QQEWTEYFQQWKQRLQDR 406
           +  + +Y + WK+R +DR
Sbjct: 53  ENSYRKYRETWKERSRDR 70


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 353 QQEWTEYFQQWKQRLQDR 406
           +  + +Y + WK+R +DR
Sbjct: 53  ENSYRKYRETWKERSRDR 70


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 353 QQEWTEYFQQWKQRLQDR 406
           +  + +Y + WK+R +DR
Sbjct: 53  ENSYRKYRETWKERSRDR 70


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 353 QQEWTEYFQQWKQRLQDR 406
           +  + +Y + WK+R +DR
Sbjct: 53  ENSYRKYRETWKERSRDR 70


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 338 QRGEYQQEWTEYFQQWKQRLQDRLHHVPEPPE 433
           Q+ + QQ+  +  QQ +Q+ Q +  H P   E
Sbjct: 438 QQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEE 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,439
Number of Sequences: 438
Number of extensions: 2928
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)