Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13e12
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 31 0.12
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 28 1.1
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 27 2.6
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 2.6
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 3.4
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 3.4
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 4.5
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 4.5
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 5.9
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 7.8
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 7.8
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 7.8
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 7.8
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 25 7.8
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 25 7.8
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 31.5 bits (68), Expect = 0.12
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = -1
Query: 646 LTP*SYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF 467
L P + ++ R LL +L P T S++ +A + N L C+ K ++L
Sbjct: 731 LCPKNSSIIRHALLAKLVLFPENTADSLNEVLAA---YKNTLDLCSQDKRKQSSVLKINL 787
Query: 466 NRLFSSDSTDSLLCPKLGDASVKE 395
++LF+ S SL +LG V +
Sbjct: 788 SKLFTLHSCLSLALQRLGYGDVSK 811
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +1
Query: 22 KVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQFITAIFE 189
KVY+ + +N +FNK +L A + Y++L+++ + S Q+IT ++E
Sbjct: 244 KVYETTLKRNAKIFNKELLLNSANHSLEAYMDLINDESRRSTAE---LQYITTLYE 296
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -1
Query: 604 VPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF---NRLFSSDSTDS 434
+P L P +S+I + +W+ +LS + R ++FT + + DS S
Sbjct: 318 LPISLNPDFLISNIHKVSESPRVWVTILSSLSRSCQKFRKKIAFTLFVGKQSKNDDSDFS 377
Query: 433 LLCPKLGDAS 404
LC +L + S
Sbjct: 378 SLCQRLDEIS 387
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +1
Query: 130 SAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 282
S FG+ +C+ + FT S K W N +V ++H +N+
Sbjct: 120 SFFGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYNV 170
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 567 DDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTR 692
D I + G NK S+ + T+ + SPN+ +T+SN T+
Sbjct: 891 DSIKRLGDNKFEDKSLRICTIPNSIFDSPNSHTTNSNSFFTK 932
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 10 LFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNV-INYCEQFITAIF 186
LF K+ ++V E V+N L D I + + +D+SAFG I Y + + +F
Sbjct: 272 LFPSKLTPYVVTFVELVWNIIEKLLDPYIREVVFSDGLDDSAFGDKYPIRYLVELL--LF 329
Query: 187 EIFTLSSKIV 216
L SK V
Sbjct: 330 VSVALQSKFV 339
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +1
Query: 166 QFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 282
Q + A + ++L + P WEND LLK H +
Sbjct: 750 QLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHHKV 788
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 119 WSTSLRSAATLLTIANSLSRPFSKFLRSAVKSL 217
WSTS ++LL I + P SK L +KS+
Sbjct: 359 WSTSWEMLSSLLAIDFDVLLPHSKILWECIKSV 391
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/43 (23%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -2
Query: 171 KLFAIVNNVAAERR-LVDQIHICLIHNHC--IEQYVVFVKNAL 52
K+ +++++ +E + LVD+++ +++NHC +E+ + V+ +
Sbjct: 432 KIVTVLDSLTSEHKDLVDKVYTNVLNNHCKNLEKLIELVETTI 474
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 646 LTP*SYTVPRKMLLVPTLLEPSLTMSSIDSG 554
LTP +P+ ++L+P L+ L S+I SG
Sbjct: 673 LTPGQLVLPKNLVLLPILILAVLKSSAIRSG 703
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 622 PRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAM-RKL 497
P + ++ PT++E + ++ D +S W N SP ++ RKL
Sbjct: 514 PNREIIQPTIVESTSFLAWKDEAYSLGMEWANAYSPDSISRKL 556
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 691 RVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSSID--SGFS 548
R T L + A G + + PR++L V EP+ + SS++ SGFS
Sbjct: 402 RPKATQLSLEGALGKIAVNTVRTPRQLLNVKRPTEPASSNSSLNNFSGFS 451
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 694 PRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTL 593
P V++ V AF +TP YTVP+ +++PTL
Sbjct: 384 PPVLMVPYRVKKAF-PITP-DYTVPKDAMVIPTL 415
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 513 HGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTM 686
+G KL + E PLS +D++ GSN T+ +F ++ G +S + NV++
Sbjct: 508 NGSMKLDSIQ-GEIPLSNNDVLYRGSNLRNTSELFALVIFT-GEESKIRMNAVRNVSV 563
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +3
Query: 396 SLTEASPSLGQSSESVESDENKRLNVKLN--NARVANLRIAHGDNKLSQ 536
SLT+A SL + S+SVE + +L+ +L+ ++AN R G L Q
Sbjct: 16 SLTDAIDSLDKRSDSVEV-KIAKLDAQLSVFQQKIANTRPGPGQTALKQ 63
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 570 DIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVT 683
D +KE + K +S+F ++Y PNA+ N T
Sbjct: 64 DSIKEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNST 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,865,555
Number of Sequences: 5004
Number of extensions: 57631
Number of successful extensions: 189
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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