Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e07
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.021
SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.036
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 34   0.063
SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)                     32   0.25 
SB_56625| Best HMM Match : DUF1443 (HMM E-Value=3.1)                   29   2.4  
SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39)          28   5.5  
SB_43502| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)                     27   7.2  
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)                   27   7.2  
SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.6  

>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 18/71 (25%), Positives = 37/71 (52%)
 Frame = +1

Query: 148 YDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFAD 327
           +D+    + F+ F ++H++ Y+DD++       F+ ++  I  +N ++       N FAD
Sbjct: 477 FDIPHLDDDFDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHFAD 536

Query: 328 YTPEEQQSRLG 360
            T +E +S  G
Sbjct: 537 LTDDEFKSYKG 547


>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 17/73 (23%), Positives = 37/73 (50%)
 Frame = +1

Query: 148 YDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFAD 327
           +++ +   +F+ +VK+H + YKD+ +     + FK +L  I+  N ++      +N   D
Sbjct: 547 HNVEKVHRVFDKYVKKHKKNYKDNKEHHTRREHFKHNLRFIHSKNRRHAGYYLAMNHLGD 606

Query: 328 YTPEEQQSRLGLR 366
            + +E +   G R
Sbjct: 607 RSDKELRVLRGRR 619


>SB_35600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = +1

Query: 154 LNQAKEL----FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKF 321
           L Q++EL    F+ F ++H++ Y+DD++       F+ ++  I  +N ++       N F
Sbjct: 132 LGQSRELVDDDFDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHF 191

Query: 322 ADYTPEEQQSRLG 360
           AD T +E +S  G
Sbjct: 192 ADLTDDEFKSYKG 204


>SB_49174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = +1

Query: 175 FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQSR 354
           F+ F ++H++ Y+DD++       F+ ++  I  +N ++       N FAD T +E +S 
Sbjct: 44  FDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHFADLTDDEFKSY 103

Query: 355 LG 360
            G
Sbjct: 104 KG 105


>SB_21723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = +1

Query: 175  FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQS 351
            F+ F ++H++ Y+DD++       F+ ++  I  +N ++       N FAD T +E +S
Sbjct: 1194 FDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHFADLTDDEFKS 1252


>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = +1

Query: 175  FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQSR 354
            F+ F ++H++ Y+DD++       F+ ++  I  +N ++       N FAD T +E +S 
Sbjct: 1286 FDEFRQQHDKMYEDDSEHCRRKHIFRHNVRYIRSMNRRSLPHKLEPNHFADLTDDEFKSY 1345

Query: 355  LG 360
             G
Sbjct: 1346 KG 1347


>SB_49063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = +1

Query: 154 LNQAKEL----FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKF 321
           L Q+++L    F+ F ++H++  +DD++       F+ ++  I  +N ++       N F
Sbjct: 53  LGQSRDLVDDDFDEFRQQHDKVCEDDSEHRRRKHIFRHNVRYIRSMNRRSLPYKLEPNHF 112

Query: 322 ADYTPEEQQSRLG 360
           AD T +E +S  G
Sbjct: 113 ADLTDDEFKSYKG 125


>SB_33866| Best HMM Match : NOGCT (HMM E-Value=6.8)
          Length = 234

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 16/71 (22%), Positives = 34/71 (47%)
 Frame = +1

Query: 148 YDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFAD 327
           Y  +   + F+ F ++H++ Y+DD++       F+ ++  I  +  ++       N F D
Sbjct: 35  YSRDLVDDDFDEFRQQHDKVYEDDSEHRRRKHIFRHNVRYIRSMKRRSLPYKLEPNHFGD 94

Query: 328 YTPEEQQSRLG 360
            T +E +S  G
Sbjct: 95  LTDDEFKSYKG 105


>SB_56625| Best HMM Match : DUF1443 (HMM E-Value=3.1)
          Length = 248

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 64  AKMNFVSVALLIATVVMASSAETDTPRHYDLNQA 165
           A + F++  +L+ TV+ A+  ETD  R    NQA
Sbjct: 98  AAVLFIAAMILVVTVLWATKQETDRNRQMSRNQA 131


>SB_4269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 184 FVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTTFGINKFADYTPEEQQS 351
           F ++H++ Y+DD+        F+ ++  I  +N ++       N F D T +E +S
Sbjct: 44  FREQHDKVYEDDSKHHRLKHIFRHNVRYIRSMNRRSLPYKLEPNHFGDLTDDEFKS 99


>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 124 AETDTPRHYD---LNQAKELFEIFVK-EHNREYKDDADRELHYQSFKKHLAEINQLN 282
           AE D  R+ +     Q  E ++ FVK +H +  K  ADREL  +  +K +    + N
Sbjct: 250 AEEDKKRYVEELRAYQQSEQYQAFVKRQHVKRTKHPADRELEIRELRKSVLTSQEQN 306


>SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39)
          Length = 504

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 175 FEIFVKEHNREYKDDADRELHYQSFKKHLAEINQLNEKNPYTT-FGINKFADYTPEE 342
           F  F+K++ + Y+D+ +     + F+ ++ +  ++ + +  T  +G   F+D + EE
Sbjct: 178 FNAFLKKYKKSYQDETEYRHRMKIFESNMRKAAKMQKMDSGTARYGPTIFSDLSEEE 234


>SB_43502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 34  SKPVPLLIHCAKMNFVSVALLIATVVMASSAETDTPRHYDL 156
           S P+ LL+HC   +     L   T +++SS   DTP  Y +
Sbjct: 50  SMPMGLLLHCNHGSTEKAILNNITDIVSSSLPIDTPVKYQI 90


>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 347

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 386 KFCDFSLSECYSKRNKCIV--TACKMFK 463
           K CDF +  C+ K  KC V    CK+ K
Sbjct: 45  KTCDFCVKPCFDKHTKCAVYKNFCKVPK 72


>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
          Length = 553

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 383 HKFCDFSLSECYSKRNKCIVTAC 451
           H FC++ L     KRN C +  C
Sbjct: 388 HSFCEYCLQSWLRKRNTCPICRC 410


>SB_47669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 130 TDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAE 267
           +D P+  +L+  + LFE    +      DD  RE+ + +FK  L E
Sbjct: 520 SDEPKRSELDPQRTLFETGQGQGQVRRTDDEKREMFFIAFKDILPE 565


>SB_2203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 130 TDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHLAE 267
           +D P+  +L+  + LFE    +      DD  RE+ + +FK  L E
Sbjct: 139 SDEPKRSELDPQRTLFETGQGQGQVRRTDDEKREMFFIAFKDILPE 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,563
Number of Sequences: 59808
Number of extensions: 265713
Number of successful extensions: 717
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)