Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e05
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    87   2e-18
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi...    29   0.49 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   6.0  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   8.0  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    25   8.0  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   8.0  

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 43/191 (22%), Positives = 96/191 (50%), Gaps = 4/191 (2%)
 Frame = +3

Query: 144 TEYWVISAPG-DKTCQQTWDTLNNATKSGN---LSVNYKFPIPDLKVGTLDQLVGLSDDL 311
           +++W++S P    +     D +     SG+   +S    F +P  KV +LD L+  S+ L
Sbjct: 4   SDFWILSVPSRGGSNADLCDDIERLLVSGSTSLISTVAPFDVPPFKVESLDVLISQSEQL 63

Query: 312 GKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSL 491
            K D        K++  +   +      L +  M  +     Y++ F W+ +++ + +++
Sbjct: 64  TKQDAQCASAISKISDIIKNTVSSSSGDLKDYFMVQDKSPLEYVSSFAWNSSRFHMNKTI 123

Query: 492 RNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILD 671
             I+D I+ ++   + D++ + +++        N++KKQ+G+L  ++LA++V +E  +  
Sbjct: 124 SEISDRITSEIISFENDIRTRQTSFQQASSAFQNMQKKQSGNLSQKSLANIVHEEDVVHG 183

Query: 672 SEYLTTLLVIV 704
           S+YLT + + V
Sbjct: 184 SDYLTNVFIAV 194


>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +3

Query: 480 KQSLRNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKE 656
           K   +NIA +    V +I  D  V+    N +KG    L  K+   +   NL D+ K+E
Sbjct: 218 KNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGTGTKLNGKEVAEVPKINLLDVEKQE 276


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 345 RKVAQYLGEVLEDQRDKLHENLMAN 419
           +KVAQ L E+L DQR  L  + +AN
Sbjct: 921 KKVAQRLTELLSDQRVHLPSSKIAN 945


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 240 NYKFPIPDLKVGTLDQLVGLSD--DLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLM 413
           N  FP+  LK     Q+   SD  + GKL    +G+ +K  +Y   + +   D     L 
Sbjct: 68  NEFFPLLSLKKEITLQIERCSDPNERGKLVNEAKGLKKKTEEYNKIISKVTNDLYQYCLA 127

Query: 414 ANNSDLPT 437
             N+ LPT
Sbjct: 128 VPNTTLPT 135


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = -1

Query: 498 YSADSALWGT*-PCPIGSESNKWVGHCYWPSSFHGAYRADLQVPLQGTGLPSWSHLRRKY 322
           ++ D A WG    C  GS +N  V     P   HG         L G  LPS  HL   Y
Sbjct: 90  FNLDPAKWGVNVQCLSGSPANMQVYQAIMPP--HGR--------LMGLDLPSGGHLSHGY 139

Query: 321 QACPDHLTAPPT 286
           Q     ++A  T
Sbjct: 140 QTDTKKISAVST 151


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = -3

Query: 346 LVTPSTKVSSLPRSSDSPTN*SKVPTLRSGIGNL*LTLRLPDLVALFRVSQVC*QVLSPG 167
           L  PS  V SLPR+S+SP+     P  +       +   + D+ A F  SQ      +  
Sbjct: 734 LSAPSD-VGSLPRASNSPSRPVMHPNTQG------INTEIKDMAAQFPNSQTGGLTPNSW 786

Query: 166 ALITQYSVIFTTR 128
           ++ T  SV FTT+
Sbjct: 787 SMNTNVSVPFTTQ 799


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,268
Number of Sequences: 5004
Number of extensions: 59041
Number of successful extensions: 170
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)