Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e02
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    29   0.88 
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    28   1.2  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    28   1.2  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    28   1.5  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   2.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.7  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   3.5  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   4.7  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    26   4.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.2  

>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 273 SAASAIPSLVDAFSSSKPPQTDTPP 347
           S  S+ PSL  +  +S PP T TPP
Sbjct: 158 STVSSTPSLNHSLQNSMPPSTPTPP 182


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 457 LLNV*SSLFNACTSILPAPKPNRTVSLCNHYQTSPPS*KAT 579
           +L V S +++A TS LP+      V+L    Q SPPS K T
Sbjct: 131 VLFVNSGMWSASTSFLPSSFAMNMVTLALSAQLSPPSTKRT 171


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 46  RPQNRRSARTSLSDNAFPRFLLVITPP 126
           RPQ +RS+   LS +AF +F+   +PP
Sbjct: 139 RPQAKRSSSRLLSTDAFSQFISSFSPP 165


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +3

Query: 504 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 674
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 675 DVTVEGVNVLATP 713
           DV+ E    L+TP
Sbjct: 367 DVSDEEQRFLSTP 379


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 237 DLFMEEIVPLVVSAASAIPSLVDAFSSSKPPQTD 338
           D+F  + +P++ ++A  IPSL  A   SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 486  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 599
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 567 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 656
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 327 GVWKKRKHRPRREWPKRQKRLKAQF 253
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -2

Query: 348 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQFLP*IGHQKSSCKTPSTEGSE 193
           +A  + +  WKK +   + EW K ++  KA++       K+  K    E  E
Sbjct: 134 KAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKE 185



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 348 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 253
           +A  + +  WKK +   + EW K ++  KA++
Sbjct: 123 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 154


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 279 ASAIPSLVDAFSSSKPPQTDTPPARSMD 362
           A+  P++V  F +   PQ D PP R+++
Sbjct: 211 ATGYPAIVVPFLNGSLPQADLPPLRTIE 238


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/70 (24%), Positives = 26/70 (37%)
 Frame = +3

Query: 504 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 683
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 684 VEGVNVLATP 713
                V +TP
Sbjct: 540 YTSTPVTSTP 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,960
Number of Sequences: 5004
Number of extensions: 50704
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)