Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e02
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0175 + 22966151-22967614                                         31   0.91 
04_01_0041 - 464695-464850,467485-469029                               29   4.9  
01_05_0227 - 19512866-19514983                                         29   4.9  
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249...    28   6.4  
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595...    28   8.5  

>05_05_0175 + 22966151-22967614
          Length = 487

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -3

Query: 248 HE*VIRNPVAKHPLQKDRKRGGRNECELIN--VGGRSYPKEHKGGVITRRNRGKALSDKE 75
           HE V   P A+  L   R  GG    E++   VGG  Y  E +GG   ++ R + +SD  
Sbjct: 5   HERVAPPPAAE--LAGRRGGGGGEGMEIVTARVGGCGYGYEEEGGTRRQQRRRRKVSDGH 62

Query: 74  VRALLL 57
           V A LL
Sbjct: 63  VVAQLL 68


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 471 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 647
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 648 TVD 656
            +D
Sbjct: 100 PLD 102


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 688 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 596
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


>11_06_0767 +
           27121761-27123335,27123701-27123910,27124843-27124911,
           27125387-27125656,27126027-27126377,27126480-27126757,
           27126887-27128330
          Length = 1398

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 233 RNPVAKHPLQKDRK-RGGRNECELINVGGRSYP-KEHKGG 120
           + PV+K  L  + +  G  N+  +   GG SYP K H GG
Sbjct: 393 QGPVSKQQLPSNHQLSGSHNQPNIPGAGGPSYPAKHHLGG 432


>02_05_0788 +
           31758119-31758384,31758482-31758634,31759385-31759509,
           31759650-31759678,31760943-31761008,31761059-31761125,
           31761226-31761370,31761404-31761451,31762014-31762182,
           31762645-31762779,31762858-31763064,31763608-31763735,
           31763815-31763866,31764046-31764060,31764502-31764609
          Length = 570

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +3

Query: 462 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 641
           Q   I  +  ++ L       N  TV  + N    + GY+    +N+   +    PSLK 
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256

Query: 642 PVTVDLCWTTADVTVEGVNVL 704
               D C  T ++ +EG++ L
Sbjct: 257 ----DFCEPTVEM-LEGMSAL 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,780,227
Number of Sequences: 37544
Number of extensions: 384972
Number of successful extensions: 1101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)