Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e02
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   3.8  
SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5)                      29   5.0  
SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)               28   6.6  
SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         28   8.7  

>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +3

Query: 495 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 602
           F +TG E KS+S+T++    +P V ++ +G  D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522


>SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5)
          Length = 572

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 109 GETEGKHCLTKKFGHFSYFEGEFLFLGTFTAKEI 8
           G T G  CL    G+ SYF  E+LF   F  + I
Sbjct: 504 GSTAGYTCLAHNLGYDSYFILEYLFTNGFKPEVI 537


>SB_14215| Best HMM Match : ZF-HD_dimer (HMM E-Value=1.5)
          Length = 738

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 354 NAQAGYQSEGVWKKRKHRPRREWPKRQKRLKAQFL 250
           NA+A Y    + +K  H   R W + Q+R+KA  L
Sbjct: 189 NAEATYNRNYIRQKLDHGLNRIWKEGQERIKAHLL 223


>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 109 GETEGKHCLTKKF-GHFSYFEGEFLFLGTFTAKEI 8
           G   G  CL   F G+ SYF  E+LF  +FT + I
Sbjct: 440 GSNAGYTCLAHNFKGYDSYFILEYLFTNSFTPEVI 474


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +3

Query: 537  VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 647
            ++ + NV+ +    RDA+ V   AVV+ S PSL+IP+
Sbjct: 1101 IEFVKNVTKMFPLSRDAFSVG--AVVYGSEPSLEIPL 1135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,956,277
Number of Sequences: 59808
Number of extensions: 404299
Number of successful extensions: 1197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)