Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13e02
         (718 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X89894-1|CAA61984.1|  443|Homo sapiens nuclear receptor protein.       31   3.1  
S81243-1|AAB36006.1|  684|Homo sapiens CHN protein.                    31   3.1  
D78579-1|BAA11419.1|  626|Homo sapiens neuron derived orphan rec...    31   3.1  
AL359710-3|CAI95139.1|  443|Homo sapiens nuclear receptor subfam...    31   3.1  
AL359710-2|CAI95138.1|  626|Homo sapiens nuclear receptor subfam...    31   3.1  
AL359710-1|CAM16648.1|  637|Homo sapiens nuclear receptor subfam...    31   3.1  
AL358937-4|CAI95320.1|  626|Homo sapiens nuclear receptor subfam...    31   3.1  
AL358937-3|CAM22558.1|  637|Homo sapiens nuclear receptor subfam...    31   3.1  

>X89894-1|CAA61984.1|  443|Homo sapiens nuclear receptor protein.
          Length = 443

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 480 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 641
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>S81243-1|AAB36006.1|  684|Homo sapiens CHN protein.
          Length = 684

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 480 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 641
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 93  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144


>D78579-1|BAA11419.1|  626|Homo sapiens neuron derived orphan
           receptor protein.
          Length = 626

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 480 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 641
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL359710-3|CAI95139.1|  443|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 443

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 480 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 641
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL359710-2|CAI95138.1|  626|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 626

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 480 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 641
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL359710-1|CAM16648.1|  637|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 637

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 480 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 641
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 46  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97


>AL358937-4|CAI95320.1|  626|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 626

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 480 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 641
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 35  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86


>AL358937-3|CAM22558.1|  637|Homo sapiens nuclear receptor subfamily
           4, group A, member 3 protein.
          Length = 637

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 480 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 641
           + +L  DL  TE  + + T  SLP++S+ ++GY   Y +    V     P +K+
Sbjct: 46  YTKLTMDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,082,458
Number of Sequences: 237096
Number of extensions: 1962079
Number of successful extensions: 4644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4644
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)