Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13d23
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330... 32 0.31
02_04_0609 + 24312528-24313352 31 0.73
09_02_0060 + 3729613-3729863,3730377-3730392 28 5.1
07_01_0307 - 2194796-2199274 28 5.1
07_01_0159 - 1116786-1117153,1117251-1119936 28 5.1
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805... 28 5.1
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 28 5.1
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 28 6.8
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634... 28 6.8
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 27 8.9
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530... 27 8.9
>01_06_1129 +
34732007-34732091,34732814-34732934,34733012-34733083,
34733168-34733242,34733348-34733419,34733514-34733675,
34733780-34733854,34733932-34734003,34734089-34734160,
34734245-34734313,34734388-34734462,34734557-34734628,
34734732-34734866,34734946-34735415,34735490-34735648,
34735741-34735880,34735974-34736193,34736305-34736540,
34736627-34737130
Length = 961
Score = 32.3 bits (70), Expect = 0.31
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = -3
Query: 469 SGPVLGSIKH-TIMLSTSNRNMPLSSTV--LVGVIPLNTINMDLNSLISKFAVPRVMVTL 299
SGPV GSI + + ++ S + L+ TV L L +++ N+ +S A PR TL
Sbjct: 253 SGPVPGSIANLSRLMELSLASNQLNGTVPDLTSANALTYVDLSNNNFMSSPA-PRWFSTL 311
Query: 298 LDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSS 191
+ F D + T+P + P L + SL +S
Sbjct: 312 TSLTTLFMDSDHLTGTIPSALFSFPQLQQISLAKNS 347
>02_04_0609 + 24312528-24313352
Length = 274
Score = 31.1 bits (67), Expect = 0.73
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
Frame = -3
Query: 469 SGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPLNT--------INMDLNSLISKFAVPR 314
S + G+I ++ S+S + LS+ +LVG IP N +++D N+L
Sbjct: 132 SNSLHGAIPVSLTNSSSLSYLDLSTNLLVGAIPANISLLSNLEYLDLDQNNLTGTVLQTI 191
Query: 313 VMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSSIDSG 179
+T L++L F + S ++P K+ +P L++ L +++ G
Sbjct: 192 GDITSLEILYLFQNQL--SGSIPDKIWQLPNLMQLVLGENNLSGG 234
>09_02_0060 + 3729613-3729863,3730377-3730392
Length = 88
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 129 ANWPPGRY*ALRLIVCSRLIPPIRC 55
A WPP RY + R C R +P + C
Sbjct: 35 AKWPPSRYRSYR-ATCCRAVPSLLC 58
>07_01_0307 - 2194796-2199274
Length = 1492
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 480 EVRELRKSNCTLVYTKNEAAQQVLL 554
E+RELR N V+TK EAA+ LL
Sbjct: 798 ELRELRIDNLEKVHTKEEAAEAKLL 822
>07_01_0159 - 1116786-1117153,1117251-1119936
Length = 1017
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 487 RTSRSDSGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPLNTINM-DLNSLI 335
RT ++G I I L ++ RNM L S L G+IP N+ LN++I
Sbjct: 154 RTLDVSRNHLVGDITPNIALLSNLRNMRLHSNNLTGIIPPEIGNITSLNTVI 205
>04_04_1401 +
33279092-33279286,33280223-33280306,33280459-33280524,
33280945-33281028,33281181-33281246,33281719-33281802,
33281955-33282020,33282323-33282388,33282667-33282726,
33282805-33282888,33282968-33283111,33283552-33283586,
33283694-33283746,33283828-33283928,33284516-33284974
Length = 548
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 72 SDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGT 251
SD+NK + KL + ++ R GDNK +K +D + +N + L
Sbjct: 202 SDDNKSDSCKLRDKTTSDDRSKSGDNKYDSCKTRDKKPIVDLADEFENNTIKKKITLLSE 261
Query: 252 VYDY 263
YD+
Sbjct: 262 KYDF 265
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 84 CSRLIPPIRC-SALNWATPRLR 22
CS +PP+RC L W+ PR++
Sbjct: 23 CSSRLPPLRCFVGLRWSAPRIQ 44
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +3
Query: 9 LNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 188
++ + L + LG E + DE RL + + A+ + GDN M+ ++ +
Sbjct: 450 ISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVR 509
Query: 189 IDDIVKEGS 215
+ D+V++ +
Sbjct: 510 LHDVVRDAA 518
>02_04_0123 +
19961904-19962096,19962836-19963029,19963334-19963465,
19963921-19964038,19964248-19964484,19964576-19964658,
19964777-19965004,19965394-19965470,19965590-19965626,
19965786-19965952,19966156-19966234,19966301-19966378,
19967459-19967575,19967999-19968379,19968453-19968590,
19968680-19968769,19968832-19968840
Length = 785
Score = 27.9 bits (59), Expect = 6.8
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = -2
Query: 545 LLSCLVFRVHQSAVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQHAIVLYSFSGRYTF 369
+L L+ R SA+ AQ F P V DQA N+AVD Q A+ +F G + F
Sbjct: 55 ILPPLLSRGSDSALFVAQLIRFIFRTLP-VYDDQASNNAVDDLVQLALRKPTFLGHFAF 112
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 12 NLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSI 191
N+ L + SP+ S+ +E D KR+ L I +G + + +E+P S+
Sbjct: 158 NIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQPFSV 217
Query: 192 D 194
D
Sbjct: 218 D 218
>06_03_0948 -
26252230-26252460,26252567-26252614,26252703-26253041,
26253132-26253260,26255404-26255967
Length = 436
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 144 DNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSS 299
D +++MY++EK L + + +G NS+ GT + V SP ++ T S
Sbjct: 243 DGDMAEMYLSEKKLRTEASFYGDQSMLGYNSVGDGTSFSAPV-SPVSSPTES 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,850,965
Number of Sequences: 37544
Number of extensions: 363181
Number of successful extensions: 1015
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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