Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d23
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical ...    32   0.28 
Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical p...    31   0.86 
Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.        28   4.6  
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ...    28   4.6  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical
           protein T14B4.3 protein.
          Length = 296

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -2

Query: 509 AVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFKFLD 336
           +V    F   +FG    VG  QA      F+   A+++    G   F+Y+ H F F D
Sbjct: 38  SVSLLNFNKNAFGLGAAVGAHQAIGDEKLFQKPKALLIIVIDGLENFDYDGHAFNFTD 95


>AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical
           protein M04G7.2 protein.
          Length = 550

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
 Frame = +3

Query: 24  LTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMY-IAEKPLSIDDI 200
           LT  SPS  ++S+S+E + ++  N  ++ A     R A+   KL + + ++ + +++DD 
Sbjct: 209 LTADSPSSRRTSKSLEENSSETTNDSISLADDEETREAY--RKLFKDFAMSSQKMTLDDF 266

Query: 201 VKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNV 305
            +E SN  G     L TV+++ V   N  +  SN+
Sbjct: 267 KQEFSNLPGDPPSDLCTVFNHPVN--NKKNRYSNI 299


>Z81527-14|CAB04278.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +3

Query: 90  LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 254
           LN+ L   +   L     DN +  + + ++    D ++K     +G N    NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201

Query: 255 YDYGVKSPNAASTSSNVT 308
           YDY V SP    +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218


>Z79753-8|CAB02089.2|  506|Caenorhabditis elegans Hypothetical
           protein F35E12.8 protein.
          Length = 506

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +3

Query: 90  LNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVK-----EGSNKVGTNSIFLGTV 254
           LN+ L   +   L     DN +  + + ++    D ++K     +G N    NS F+G +
Sbjct: 145 LNLNLQPTQTYTLESPTNDNVVINVALVDQIGKTDIVIKLIYVYDGPN---VNSRFVGNL 201

Query: 255 YDYGVKSPNAASTSSNVT 308
           YDY V SP    +S N T
Sbjct: 202 YDY-VNSPTLMKSSGNST 218


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -3

Query: 256 YTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLN-LLSPCAMRKLATRALLSFTFNRLF 80
           Y + + + +  T+ E ++  SS++ GF  +Y +LN ++S   +     R  + F  NRL 
Sbjct: 275 YLLSQSLQVFLTVWE-TINRSSLEDGFPTMYSYLNDIVSIFTLLASCLRFPIYFCCNRLI 333

Query: 79  SSDSTDSL 56
            + S D+L
Sbjct: 334 HTASVDTL 341


>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 12  NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRIAHGDNKLSQMY 167
           N N++ E  P+  QSS   E+D++ R  V+ LNN  +A  ++  G   L++ Y
Sbjct: 17  NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL--GIEGLAKQY 67


>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
           protein B0334.8 protein.
          Length = 1146

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 296 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 120
           RC  RV R  ++     Q + V+ H F+  L   + Y  R    + +     A+CD +IG
Sbjct: 656 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 715

Query: 119 H 117
           H
Sbjct: 716 H 716


>Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical
           protein C40H1.9 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 484 CANCANPTALWCTRKTRQLSKFY---WKITLPLLMLTKPPI 597
           C+NC     +WC  +++  S F     KI+L L   TKP +
Sbjct: 25  CSNCVGSGQVWCVEQSQCNSSFVSCSTKISLQLNCPTKPKV 65


>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
          Length = 1167

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 296 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 120
           RC  RV R  ++     Q + V+ H F+  L   + Y  R    + +     A+CD +IG
Sbjct: 677 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 736

Query: 119 H 117
           H
Sbjct: 737 H 737


>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
           protein B0334.8 protein.
          Length = 1146

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 296 RCAGRVWRFNSIVVYGAQKNAVSAH-FVGALFDYVVYR*RFFGNIHLAQFIIAVCDAQIG 120
           RC  RV R  ++     Q + V+ H F+  L   + Y  R    + +     A+CD +IG
Sbjct: 656 RCTDRVIRKFAVEKLNEQLSPVTFHLFILPLIQALKYEPRAQSEVGMMLLTRALCDYRIG 715

Query: 119 H 117
           H
Sbjct: 716 H 716


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 285 ASTSSNVTMTRGTANFD--IKEFKSMFIVFKGIT 380
           A+TS+NVT  + T NFD  +K    +  V  GIT
Sbjct: 133 ATTSTNVTNAKSTTNFDGYLKHISVIAHVANGIT 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,322,161
Number of Sequences: 27780
Number of extensions: 310577
Number of successful extensions: 1038
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)