Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d22
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    29   0.48 
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    25   5.9  

>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 47  QSTMNLKLFRIFKTNTISKINYRCTSRVVPILNNYKSNSDDNQSSYFRCILGATIGFIGY 226
           +   N    RI K N+  +IN    S V   +N +K+   D    ++    G  +G IGY
Sbjct: 293 EKATNTTEIRICKDNSFVRINNDLWSTVADFMNQHKAIKPDTNLPFY----GGIMGIIGY 348


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 96  IVFVLKIRK-SFKFIVDCFCFPHLTFRLCL*QA 1
           ++FV  ++K ++KF    FC+ H+T  L + Q+
Sbjct: 162 VLFVASLKKGNYKFQFSQFCWTHMTLLLVVGQS 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,949
Number of Sequences: 5004
Number of extensions: 40058
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)