Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13d22
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0163 - 28094574-28094726,28095248-28095382,28095771-280959... 42 3e-04
11_02_0056 + 7828453-7828717,7829425-7829427,7829658-7829912,782... 40 0.001
03_05_0283 - 22694137-22694952 29 2.6
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024... 29 2.6
02_03_0240 - 16739628-16740369,16740392-16740978 28 4.5
04_04_0124 + 22929700-22929761,22930192-22930310,22930459-229305... 28 6.0
12_02_1279 + 27510605-27513301 27 7.9
>05_07_0163 -
28094574-28094726,28095248-28095382,28095771-28095923,
28096010-28096208,28096312-28096349,28096849-28097020,
28097666-28097788,28097869-28098284
Length = 462
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 365 RIDAFTGKKLKI--SNGSGFIIKEDGLILTNAHVVVNKPNAIVKVRLTDGSTHEALIEHY 538
R DAFT L++ +GSGF+ + G I+TN HV+ + + ++V L D + +EA + +
Sbjct: 139 RQDAFTLDVLEVPQGSGSGFVWDKSGHIVTNFHVI--RGASDLRVTLADQTVYEAQVVGF 196
Query: 539 DLQSDLATL 565
D D+A L
Sbjct: 197 DQDKDVAVL 205
>11_02_0056 +
7828453-7828717,7829425-7829427,7829658-7829912,
7829997-7830124,7831063-7831207,7832178-7832275,
7833253-7833395,7835119-7835239,7835492-7835584,
7835712-7835828
Length = 455
Score = 39.9 bits (89), Expect = 0.001
Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Frame = +2
Query: 383 GKKLKISNGSGFIIKEDGLILTNAHVVVN----KP--NAIVKVRLTDGSTHEALIEHYDL 544
G L+ S GSG II DG ILT AHVV++ KP V V L DG E + + D
Sbjct: 178 GWVLEKSIGSGTIIDPDGTILTCAHVVLDFQSTKPILRGKVSVTLQDGREFEGTVLNADR 237
Query: 545 QSDLATL 565
SD+A +
Sbjct: 238 HSDIAVV 244
>03_05_0283 - 22694137-22694952
Length = 271
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 407 GSGFIIKEDGLILTNAHVVVNKPNAIVKVRLTDGSTHEALIEHYDLQSDLATL 565
G+GF I + GLI+T AH V K + R D +A + H D+A L
Sbjct: 40 GTGFCIDQRGLIMTCAHCVSGKTCFV--ARQNDKKFQKAYVLHKIESWDIAIL 90
>02_05_0497 -
29502012-29502101,29502128-29502197,29502302-29502411,
29502530-29502641,29503341-29503498,29503592-29503807,
29504127-29504354,29504722-29504801,29504886-29505056,
29505179-29505281,29505369-29505551,29506313-29506813,
29506935-29507100,29507517-29507566,29508047-29508127,
29508291-29508398,29508874-29508939,29509053-29509109,
29509442-29509507,29509917-29510006,29510850-29510975,
29511681-29511717,29512192-29512250,29512562-29512615,
29513294-29513428,29513542-29513612,29513720-29513957
Length = 1141
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 374 AFTGKKLKISNGSGFII-KEDGLILTNAHVVVNKPNAIV 487
AF + S +GF++ K G+ILTN HVV KP +V
Sbjct: 47 AFDTEVAGASYATGFVVDKSRGIILTNRHVV--KPGPVV 83
>02_03_0240 - 16739628-16740369,16740392-16740978
Length = 442
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 274 ERTKGEIQFYS*RCGSFGGVCCVY 345
+RT+GE++ Y G FG +CCV+
Sbjct: 316 KRTRGEVREYWIDDGMFGTLCCVH 339
>04_04_0124 +
22929700-22929761,22930192-22930310,22930459-22930541,
22930640-22930738,22930769-22930786,22931044-22931110,
22931244-22931319,22931450-22931516,22932303-22932520,
22933124-22933191,22933743-22933822,22934362-22934448,
22934524-22934631,22934753-22934848,22935045-22935140,
22936826-22937155
Length = 557
Score = 27.9 bits (59), Expect = 6.0
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Frame = +2
Query: 404 NGSGFIIKEDGLILTNAHVVVN------KPNAI---VKVRLTDG--STHEALIEHYDLQS 550
NGSG + + G I+TN HVV N KP + V + DG E + D
Sbjct: 132 NGSGVVWDDSGHIVTNYHVVGNALSKKPKPGEVVARVNILAADGIQKNFEGKLVGADRSK 191
Query: 551 DLATL 565
DLA L
Sbjct: 192 DLAVL 196
>12_02_1279 + 27510605-27513301
Length = 898
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +2
Query: 59 NLKLFRIFKTNTISKINYRCTSRVVPILNNYKSNSDDNQSSYFRCILGA 205
NL F TN + ++ T +SDDNQS +F +L A
Sbjct: 41 NLTYFHFLDTNGVFLLSRNATFSAAVYNAGVDPSSDDNQSRFFFSVLHA 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,633,581
Number of Sequences: 37544
Number of extensions: 224205
Number of successful extensions: 410
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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