Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d22
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed ...    27   7.1  

>AF039047-13|AAM15587.1|  402|Caenorhabditis elegans Coexpressed
           with polycystins protein4 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = +2

Query: 68  LFRIFK-TNTISKINYRCTSRVVP----ILNNYKSNSD-DNQSSYFRCILGATIGF 217
           +F IF   N I+K+N +CTS  +P     L  Y+  S+ D   S+F    GA+  +
Sbjct: 9   VFLIFNLVNNINKVNSQCTSDTIPSSLATLTQYQVGSEGDPYYSHFLVNGGASFSY 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,560,222
Number of Sequences: 27780
Number of extensions: 221394
Number of successful extensions: 512
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)