Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d21
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...   199   2e-52
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    91   1e-19
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    52   5e-08
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   3.9  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    26   3.9  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    26   5.2  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   5.2  

>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score =  199 bits (486), Expect = 2e-52
 Identities = 93/124 (75%), Positives = 110/124 (88%)
 Frame = +3

Query: 210 AVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLE 389
           +VNPKA+PLAD+ LT +IL+LVQQA++YKQLRKGANEATKTLNRG+SE I+MAAD EP+E
Sbjct: 2   SVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIE 61

Query: 390 IVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIE 569
           I+LH+P+LCEDKNVPYVFV SK ALGRACGVSRP+IS SIT NE S L PQIQ I+  IE
Sbjct: 62  ILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIE 121

Query: 570 RLLV 581
           +LL+
Sbjct: 122 KLLI 125


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 41/107 (38%), Positives = 64/107 (59%)
 Frame = +3

Query: 210 AVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLE 389
           A+ P A PLA   L  K++  V++A+  K + +G  E  K + +G   L+I+A D  P++
Sbjct: 24  ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMD 83

Query: 390 IVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQ 530
           ++ HIP+LCED NVPY++  SK+ LG A    RP  SC + +  G +
Sbjct: 84  VISHIPVLCEDNNVPYLYTVSKELLGEASNTKRP-TSCVMIVPGGKK 129


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 25/95 (26%), Positives = 48/95 (50%)
 Frame = +3

Query: 183 IVNMAETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELII 362
           ++N    E A   K   +A+A   A   +    +     ++ G N     +    ++L++
Sbjct: 93  LLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVL 152

Query: 363 MAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALG 467
           +A+D +P+E+V+ +P LC+   VPY  V++K  LG
Sbjct: 153 IASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 177 RGIVNMAETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSEL 356
           RG+ N++  E    P  Y L D  L  K  +  +    Y    +G+N + + L RGL   
Sbjct: 414 RGLQNLSLVEEI--PSLYSLTDTLLM-KAPSSGEANQLYTVCGRGSNSSLRQLRRGLETT 470

Query: 357 IIMAAD 374
            I+A++
Sbjct: 471 EIVASE 476


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 273 VQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLEIV 395
           V++  N K  R G N  TKT    ++ L  + ++A+ LE++
Sbjct: 7   VKRYFNLKSSRIGMNPQTKTFEGAINRLNSLQSNAKVLEVL 47


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 375 AEPLEIVLHIPILCEDKNVPYVFV 446
           A+ L+ V H P  CE KN   VF+
Sbjct: 253 AKRLDYVFHSPSTCEAKNAKVVFL 276


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 247 AASANGYALGFTAASVSAMFTMP 179
           A+ A GY L +TAA ++   T+P
Sbjct: 387 ASKATGYPLAYTAAKIALGHTLP 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,114
Number of Sequences: 5004
Number of extensions: 51427
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)