Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13d21
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 203 8e-53
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 187 6e-48
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 87 8e-18
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 87 1e-17
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 53 2e-07
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 50 1e-06
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 36 0.020
07_03_1411 + 26379556-26379620,26379883-26379940,26380057-263802... 30 1.8
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 3.1
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 28 7.1
01_01_0054 + 411675-411911,412097-412213,412401-412439,412703-41... 27 9.4
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 203 bits (496), Expect = 8e-53
Identities = 93/127 (73%), Positives = 112/127 (88%)
Frame = +3
Query: 201 TEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAE 380
++ VNPKAYPLADA LT IL+LVQQA+NYKQL+KGANEATKTLNRG+SE ++MAAD E
Sbjct: 2 SQEVVNPKAYPLADAQLTMTILDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADTE 61
Query: 381 PLEIVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQ 560
PLEI+LH+P+L EDKNVPYVFV SKQALGRACGV+RP+I+CS+T NEGSQLK IQ ++
Sbjct: 62 PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKTPIQNLKD 121
Query: 561 EIERLLV 581
IE+LL+
Sbjct: 122 AIEKLLI 128
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 187 bits (456), Expect = 6e-48
Identities = 86/125 (68%), Positives = 104/125 (83%)
Frame = +3
Query: 207 AAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPL 386
A VNPKAYPLAD+ L I LV QA NYKQL+KGANEATKTLNRG++E ++MAADAEPL
Sbjct: 2 AEVNPKAYPLADSQLAQAIQELVSQAANYKQLKKGANEATKTLNRGIAEFVVMAADAEPL 61
Query: 387 EIVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEI 566
EI+LH+P+L EDKNVPYVFV SKQALGRACGV+RP+I+CS+T NE S L+ I ++ I
Sbjct: 62 EILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASNLRDPINNLKVAI 121
Query: 567 ERLLV 581
E+LL+
Sbjct: 122 EKLLI 126
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 87.4 bits (207), Expect = 8e-18
Identities = 41/106 (38%), Positives = 65/106 (61%)
Frame = +3
Query: 198 ETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADA 377
+T A+ P A PLA L + L LV++A+ K L++G E K++ RG L I+A +
Sbjct: 11 KTPVALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNI 70
Query: 378 EPLEIVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITI 515
P++++ H+PILCE+ N+PYV+V SK+ L A RP +C + +
Sbjct: 71 SPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRP--TCCVLV 114
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 86.6 bits (205), Expect = 1e-17
Identities = 44/131 (33%), Positives = 73/131 (55%)
Frame = +3
Query: 186 VNMAETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIM 365
V + A+ P A PLA L + L LV++A+ K L++G E K++ RG L ++
Sbjct: 7 VEKKKAPTALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVI 66
Query: 366 AADAEPLEIVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQI 545
A + P++++ H+PILCE+ N+PY++V SK+ L A RP +C + + KP
Sbjct: 67 AGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRP--TCCVLV----MTKPAK 120
Query: 546 QTIQQEIERLL 578
I +E++ L
Sbjct: 121 GEINEEVKEKL 131
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/79 (27%), Positives = 41/79 (51%)
Frame = +3
Query: 300 LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALGRACG 479
++ G N T + + ++L+++A D +P+E+V+ +P LC VPY V+ K LG
Sbjct: 128 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVH 187
Query: 480 VSRPIISCSITINEGSQLK 536
+ C T+ +L+
Sbjct: 188 KKTASVLCLTTVKNEDKLE 206
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/79 (25%), Positives = 41/79 (51%)
Frame = +3
Query: 300 LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALGRACG 479
++ G + T + + ++L+++A D +P+E+V+ +P LC +PY V+ K LG
Sbjct: 113 VKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVH 172
Query: 480 VSRPIISCSITINEGSQLK 536
+ C T+ +L+
Sbjct: 173 KKTASVLCLTTVKNEDKLE 191
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 36.3 bits (80), Expect = 0.020
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +3
Query: 300 LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNV 431
++ G N T + + ++L+++A D +P+E+V+ +P LC +
Sbjct: 112 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>07_03_1411 +
26379556-26379620,26379883-26379940,26380057-26380200,
26380367-26380426,26380789-26380956,26381043-26381117
Length = 189
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 297 QLRKGANEATKTLNRGLSEL--IIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQ 458
Q RKG R L L +++AAD P + HIP L + VP + ++ +
Sbjct: 89 QSRKGHESIAPFKERVLYSLPVVLVAADCNPKWLTKHIPTLASTRQVPVLCLKDNK 144
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -1
Query: 490 GLETPQARPSACLDLTNTYGTFLSSHRIGM*RTISRGSASAAIMMSSDRPRLSVF 326
G+ + Q RP +DL +T GTF++ +RI R +S R RL++F
Sbjct: 637 GMMSKQVRPYL-MDLGSTNGTFINENRIEPSRYYELFEKDTIKFGNSSRDRLNIF 690
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 119 IISSVKREIAERLSFINSTPRHCKHG*NRSCSEPQ 223
II V E+ ERL F+ S + C+ +C E +
Sbjct: 656 IIDGVDAEVIERLKFLQSNLKDCRAFCQNNCEEQE 690
>01_01_0054 +
411675-411911,412097-412213,412401-412439,412703-412839,
413322-413670,413815-414495
Length = 519
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Frame = -3
Query: 407 WNVKNNFERFGICCH---------YDELRQTTIKRLC 324
WN + F + CH +DELR+ TIK LC
Sbjct: 277 WNRTKGADHFFVACHDWGPYTTKLHDELRKNTIKALC 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,973,410
Number of Sequences: 37544
Number of extensions: 333068
Number of successful extensions: 717
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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