Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d21
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...   205   2e-53
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    81   6e-16
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    59   3e-09
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    59   3e-09
U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    39   0.003
Z81077-2|CAD56583.2|  656|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ...    29   3.7  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U64835-7|AAG24198.2|  427|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81097-4|CAB03176.1|  100|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z68220-7|CAI79220.1|  260|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z68220-6|CAA92486.3|  293|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score =  205 bits (500), Expect = 2e-53
 Identities = 93/123 (75%), Positives = 114/123 (92%)
 Frame = +3

Query: 213 VNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLEI 392
           VNPKA+PLAD  L+ K+++LVQQA NYKQL+KGANEATKTLNRG+SE+I+MAADAEPLEI
Sbjct: 6   VNPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEI 65

Query: 393 VLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIER 572
           +LH+P+LCEDKNVPYVFVRSK ALGRACGV+RP+I+ SIT NEGSQLK QIQ I++++E+
Sbjct: 66  LLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEK 125

Query: 573 LLV 581
           LL+
Sbjct: 126 LLI 128


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
 Frame = +3

Query: 213 VNPKAYPLADAALTAKILNLVQQAT-NYKQLRKGANEATKTLNRGLSELIIMAADAEPLE 389
           VNP A PLA+  L  K+  L+++A+   K LR+G  +  K L R    + I+A +  P++
Sbjct: 39  VNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPID 98

Query: 390 IVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIE 569
           +  HIP +CE+K +PYV++ S++ LG A G  RP  S  I +      K     + + + 
Sbjct: 99  VYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRP--SILIFVKPSGDFKELYDEVAEALR 156

Query: 570 RLLV 581
            L V
Sbjct: 157 HLTV 160


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 24/56 (42%), Positives = 36/56 (64%)
 Frame = +3

Query: 300 LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALG 467
           +R G N  T+ +    ++L+++A D  PLEIVLH+P LC   NVPY  ++ K +LG
Sbjct: 137 VRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 24/56 (42%), Positives = 36/56 (64%)
 Frame = +3

Query: 300 LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALG 467
           +R G N  T+ +    ++L+++A D  PLEIVLH+P LC   NVPY  ++ K +LG
Sbjct: 117 VRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172


>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +3

Query: 264 LNLVQQATNYKQ-LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYV 440
           L  V +A ++   L KG +E  K L++  +   ++A + +  + V  +  LC +  +P +
Sbjct: 26  LRAVLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLI 85

Query: 441 FVRSKQALGRACGVSR 488
            V  K+ +G  CG+ +
Sbjct: 86  KVADKKIIGEYCGLCK 101


>Z81077-2|CAD56583.2|  656|Caenorhabditis elegans Hypothetical
           protein F36A2.1b protein.
          Length = 656

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 159 VLLIQHRGIVNMAETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLN 338
           + + + R + + A T A  N   Y   D AL     +LV++ TN+   R    +  K +N
Sbjct: 111 IQIFKSRNVFSPASTTAMENLLGYEAEDQALEVDSDDLVKKITNFISARNVVADMMKCVN 170

Query: 339 RG 344
            G
Sbjct: 171 EG 172


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 264  LNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILC 416
            ++ V   TNY     G + +  T N GLS+L +M     PLE +L I   C
Sbjct: 4552 IDSVATITNYATGHNGTSSSLFTPN-GLSQLEVMQRATNPLEKILEIQTHC 4601


>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical
           protein T01G1.1c protein.
          Length = 1580

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 17  NNSIRIVNNIYTQNICDLSVELWQIPKFSLPYVKIISSVKREIAER 154
           N  ++ +   Y   I DL  EL +I      ++K+I+  +RE+ E+
Sbjct: 665 NEQMKAIKQEYELKITDLRKELKKIEALDKEHLKVIAKSQRELQEK 710


>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical
           protein T01G1.1a protein.
          Length = 1605

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 17  NNSIRIVNNIYTQNICDLSVELWQIPKFSLPYVKIISSVKREIAER 154
           N  ++ +   Y   I DL  EL +I      ++K+I+  +RE+ E+
Sbjct: 665 NEQMKAIKQEYELKITDLRKELKKIEALDKEHLKVIAKSQRELQEK 710


>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical
           protein T01G1.1c protein.
          Length = 1580

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 17  NNSIRIVNNIYTQNICDLSVELWQIPKFSLPYVKIISSVKREIAER 154
           N  ++ +   Y   I DL  EL +I      ++K+I+  +RE+ E+
Sbjct: 665 NEQMKAIKQEYELKITDLRKELKKIEALDKEHLKVIAKSQRELQEK 710


>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical
           protein T01G1.1a protein.
          Length = 1605

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 17  NNSIRIVNNIYTQNICDLSVELWQIPKFSLPYVKIISSVKREIAER 154
           N  ++ +   Y   I DL  EL +I      ++K+I+  +RE+ E+
Sbjct: 665 NEQMKAIKQEYELKITDLRKELKKIEALDKEHLKVIAKSQRELQEK 710


>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
           protein KLP-12 protein.
          Length = 1609

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 17  NNSIRIVNNIYTQNICDLSVELWQIPKFSLPYVKIISSVKREIAER 154
           N  ++ +   Y   I DL  EL +I      ++K+I+  +RE+ E+
Sbjct: 669 NEQMKAIKQEYELKITDLRKELKKIEALDKEHLKVIAKSQRELQEK 714


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical protein
            K04H4.2c protein.
          Length = 1446

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 529  CEPSLMVIEQDIMGLETPQARPSACLDLTNTYGTFLSSHRIG 404
            C P  +V+      L T    P  C+DL  T G  L++++IG
Sbjct: 1165 CPPGYVVVYIPNSPLITNGVNPGTCIDLQCTTGLCLTANQIG 1206


>Z27078-2|CAA81588.3|  788|Caenorhabditis elegans Hypothetical
           protein K04H4.2b protein.
          Length = 788

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 529 CEPSLMVIEQDIMGLETPQARPSACLDLTNTYGTFLSSHRIG 404
           C P  +V+      L T    P  C+DL  T G  L++++IG
Sbjct: 507 CPPGYVVVYIPNSPLITNGVNPGTCIDLQCTTGLCLTANQIG 548


>Z27078-1|CAA81587.2|  628|Caenorhabditis elegans Hypothetical
           protein K04H4.2a protein.
          Length = 628

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 529 CEPSLMVIEQDIMGLETPQARPSACLDLTNTYGTFLSSHRIG 404
           C P  +V+      L T    P  C+DL  T G  L++++IG
Sbjct: 507 CPPGYVVVYIPNSPLITNGVNPGTCIDLQCTTGLCLTANQIG 548


>U64835-7|AAG24198.2|  427|Caenorhabditis elegans Hypothetical
           protein T09D3.4 protein.
          Length = 427

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 380 FGICCHYDELRQTTIKRLCGLVRAFT 303
           FG CC   +  ++TI R C  + AFT
Sbjct: 184 FGNCCFTGKFGRSTICRFCDTINAFT 209


>Z81097-4|CAB03176.1|  100|Caenorhabditis elegans Hypothetical
           protein K07A1.6 protein.
          Length = 100

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 149 ERLSFIN--STPRHCKHG*NRSCSEPQGIPIGGCRL 250
           ERL F     T R C +G  +SC+ P+  P   C+L
Sbjct: 33  ERLGFCPRYETWRKCGNGCEKSCTHPRQPPFSQCKL 68


>Z68220-7|CAI79220.1|  260|Caenorhabditis elegans Hypothetical
           protein T20D3.3b protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 277 NKLPITSNFVKARTRPQRRLIVVCLSSS*WQQMPNLSKLFFTFQ-FCAKIRM 429
           +KLP TSN+ K        L  +C S   WQ     SK F   + F  K++M
Sbjct: 110 SKLPFTSNYQKEFKNTMALLCQLCGSFENWQLFEIGSKYFTKLEMFGLKLKM 161


>Z68220-6|CAA92486.3|  293|Caenorhabditis elegans Hypothetical
           protein T20D3.3a protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 277 NKLPITSNFVKARTRPQRRLIVVCLSSS*WQQMPNLSKLFFTFQ-FCAKIRM 429
           +KLP TSN+ K        L  +C S   WQ     SK F   + F  K++M
Sbjct: 143 SKLPFTSNYQKEFKNTMALLCQLCGSFENWQLFEIGSKYFTKLEMFGLKLKM 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,913,129
Number of Sequences: 27780
Number of extensions: 294121
Number of successful extensions: 740
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)