Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d18
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    29   0.14 
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    26   1.3  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   1.8  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    24   4.0  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   5.3  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    23   7.1  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    23   9.3  

>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 29.1 bits (62), Expect = 0.14
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 41  DNYSLHNFYNNNRKPLKPTTLHDGNIK-KSVYENI 142
           DNYSL  F N N  P KP+  H   +K ++++E++
Sbjct: 112 DNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESL 146


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 20  YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKENMP 181
           +CL CT+    L  FY    K +K T +      K+  + I +  K    ENMP
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTVIFLAQCVKACGKGIKHFLKKW--ENMP 167


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 56  HNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKENMPGEHDHKFYNR 211
           HN Y++  KP+    L      KS Y +++  R L  K++  G  D KF+ +
Sbjct: 326 HNIYSSFIKPIDDRRLEFDEQSKSFYGSLS--RYLSAKKDKKG-GDSKFFQK 374


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +2

Query: 62  FYNNNRK--PLKPTTLHDGNIKKSVYENITYVRKLM 163
           F N   K  PL+P+  HD   K S Y      R++M
Sbjct: 514 FVNKRSKVLPLRPSVTHDNLSKSSDYSKNEVEREIM 549


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 248 YTFIYICFLCYNRDCKTCDRARQAYF 171
           +T+ Y C L + ++ K+C   RQ  +
Sbjct: 102 HTYCYECLLNWLKESKSCPTCRQKLY 127


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 44  NYSLHNFYNNNRKPLKP 94
           NY+  N YN N K  KP
Sbjct: 233 NYTRSNAYNKNNKDQKP 249


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -3

Query: 74   CCCKNCATNNYP*CSTGNITDA 9
            CCC  C +   P    GNI  A
Sbjct: 1103 CCCSKCNSTMSPFWWPGNICQA 1124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,061,383
Number of Sequences: 5004
Number of extensions: 18214
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)