Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d13
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.5  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   7.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 599  PTLPQA-LIDQLKPGGRLIVPV 661
            P LP A LID+LKP  R  + V
Sbjct: 961  PPLPYAALIDELKPATRYTIRV 982


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 599  PTLPQA-LIDQLKPGGRLIVPV 661
            P LP A LID+LKP  R  + V
Sbjct: 957  PPLPYAALIDELKPATRYTIRV 978


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 281 ATISAPHMHAHALEKLKNQLVPGEKALDVGSGSG 382
           A I +PH    +++K  N+   G+    + SG G
Sbjct: 375 ARIFSPHEENESVDKHPNRRARGQLRTKIESGEG 408


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 549 PRRPSPTTSLILSDESKLGLSFW 481
           PR P+ TTS       K+ LS W
Sbjct: 49  PREPAQTTSKAGIHRKKVLLSVW 71


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 549 PRRPSPTTSLILSDESKLGLSFW 481
           PR P+ TTS       K+ LS W
Sbjct: 171 PREPAQTTSKAGIHRKKVLLSVW 193


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
 Frame = +2

Query: 158 NLRTNGIIKSDTVANAMLAVDRK--NYCPSS------PYQDSPQSI-GFSATISAPHMHA 310
           +LRT  II  D    + L +DR+  N   SS       Y+DS  S+ G+    + P ++ 
Sbjct: 298 DLRTANIIADDPEGVSCLVIDRETFNQLISSLDEIRTRYKDSSSSVEGWENRATIPELN- 356

Query: 311 HALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQND 490
                L+ Q +     L VG   G+    +  + G++ R   ++ + +   + T+  Q+ 
Sbjct: 357 EEFRDLRLQDLRPLATLGVG---GFGRVELVQIAGDSSRSFALKQMKKAQIVETRQQQH- 412

Query: 491 NPSLLSSERI 520
              ++S +RI
Sbjct: 413 ---IMSEKRI 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,593
Number of Sequences: 438
Number of extensions: 3943
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)