Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13d12
(641 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9NPE3 Cluster: H/ACA ribonucleoprotein complex subunit... 103 3e-21
UniRef50_Q9V5P6 Cluster: H/ACA ribonucleoprotein complex subunit... 101 2e-20
UniRef50_Q93XX8 Cluster: H/ACA ribonucleoprotein complex subunit... 81 2e-14
UniRef50_Q019V2 Cluster: H/ACA snoRNP complex, subunit NOP10; n=... 73 6e-12
UniRef50_A2EP66 Cluster: Nucleolar RNA-binding protein, putative... 51 2e-05
UniRef50_UPI0000498FA1 Cluster: conserved hypothetical protein; ... 47 3e-04
UniRef50_Q2FPD6 Cluster: Nucleolar RNA-binding protein Nop10p; n... 46 0.001
UniRef50_A6UUW5 Cluster: Nucleolar RNA-binding protein Nop10p; n... 42 0.017
UniRef50_Q97Z78 Cluster: Ribosome biogenesis protein Nop10; n=2;... 41 0.029
UniRef50_Q8U1R4 Cluster: Ribosome biogenesis protein Nop10; n=7;... 36 0.63
UniRef50_A0B683 Cluster: Nucleolar RNA-binding protein Nop10p; n... 36 1.1
UniRef50_Q8TT00 Cluster: Ribosome biogenesis protein Nop10; n=7;... 36 1.1
UniRef50_Q3YAJ1 Cluster: Nucleolar protein family A, member 3; n... 35 1.5
UniRef50_Q8ZTY6 Cluster: Ribosome biogenesis protein Nop10; n=4;... 35 1.5
UniRef50_Q05E71 Cluster: Small nucleolar RNP protein Nop10p; n=3... 35 1.9
UniRef50_Q8TY85 Cluster: Ribosome biogenesis protein Nop10; n=2;... 33 5.9
UniRef50_Q96RL7 Cluster: Vacuolar protein sorting-associated pro... 33 7.7
>UniRef50_Q9NPE3 Cluster: H/ACA ribonucleoprotein complex subunit 3;
n=25; Eukaryota|Rep: H/ACA ribonucleoprotein complex
subunit 3 - Homo sapiens (Human)
Length = 64
Score = 103 bits (248), Expect = 3e-21
Identities = 44/63 (69%), Positives = 53/63 (84%)
Frame = +1
Query: 121 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 300
M+L+YYLN++GDR YTL DP G+ T SAHPARFSP+DKYSRHRI IKKRF +L+TQQP
Sbjct: 1 MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60
Query: 301 EPI 309
P+
Sbjct: 61 RPV 63
>UniRef50_Q9V5P6 Cluster: H/ACA ribonucleoprotein complex subunit 3;
n=13; Eukaryota|Rep: H/ACA ribonucleoprotein complex
subunit 3 - Drosophila melanogaster (Fruit fly)
Length = 64
Score = 101 bits (241), Expect = 2e-20
Identities = 46/64 (71%), Positives = 52/64 (81%)
Frame = +1
Query: 121 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 300
MYL Y +N+ GDR YTL G+PTLSAHPARFSPEDKYSR R+ IKKRFGLLLTQ+P
Sbjct: 1 MYLMYTINENGDRVYTLKKRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKP 60
Query: 301 EPIH 312
EPI+
Sbjct: 61 EPIY 64
>UniRef50_Q93XX8 Cluster: H/ACA ribonucleoprotein complex subunit
3-like protein; n=35; Eukaryota|Rep: H/ACA
ribonucleoprotein complex subunit 3-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 81.4 bits (192), Expect = 2e-14
Identities = 35/58 (60%), Positives = 45/58 (77%)
Frame = +1
Query: 121 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQ 294
MYL+ Y+N+KG++ YT P G T SAHPARFSP+DKYS+ R+++KKRFGLL TQ
Sbjct: 1 MYLQCYINEKGEKVYTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQ 58
>UniRef50_Q019V2 Cluster: H/ACA snoRNP complex, subunit NOP10; n=2;
Eukaryota|Rep: H/ACA snoRNP complex, subunit NOP10 -
Ostreococcus tauri
Length = 91
Score = 72.9 bits (171), Expect = 6e-12
Identities = 38/72 (52%), Positives = 46/72 (63%), Gaps = 13/72 (18%)
Frame = +1
Query: 124 YLRYYLNDKGDREYTLATID-------------PFGKPTLSAHPARFSPEDKYSRHRIII 264
YL YY ++KG+R YTL P G PT SAHPARFSP+DK+S+ R+ +
Sbjct: 16 YLMYYTDEKGERVYTLKVRSAKRRKPRAGDKTAPDGTPTHSAHPARFSPDDKFSKQRVAL 75
Query: 265 KKRFGLLLTQQP 300
KKRFGLL TQQP
Sbjct: 76 KKRFGLLPTQQP 87
>UniRef50_A2EP66 Cluster: Nucleolar RNA-binding protein, putative;
n=2; Trichomonas vaginalis G3|Rep: Nucleolar RNA-binding
protein, putative - Trichomonas vaginalis G3
Length = 83
Score = 51.2 bits (117), Expect = 2e-05
Identities = 28/50 (56%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 157 REYTLATIDP-FGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQPE 303
++YTL P G T SAHPARFSPEDK S RI K +F LL QQP+
Sbjct: 31 KQYTLKQKCPRCGGQTRSAHPARFSPEDKNSAERIQTKAKFNLLPYQQPD 80
>UniRef50_UPI0000498FA1 Cluster: conserved hypothetical protein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: conserved
hypothetical protein - Entamoeba histolytica HM-1:IMSS
Length = 59
Score = 47.2 bits (107), Expect = 3e-04
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +1
Query: 127 LRYYLNDKGDREYTLATIDPFGKPTL-SAHPARFSPEDKYSRHRIIIKKRFGLLLT 291
L YY ++ ++YT+ T P + SAHPA+FSP D YS++RI KK FGLL T
Sbjct: 2 LLYYCDNC--KQYTMKTECPQCNGYVRSAHPAKFSPVDPYSKYRIATKKEFGLLPT 55
>UniRef50_Q2FPD6 Cluster: Nucleolar RNA-binding protein Nop10p; n=1;
Methanospirillum hungatei JF-1|Rep: Nucleolar
RNA-binding protein Nop10p - Methanospirillum hungatei
(strain JF-1 / DSM 864)
Length = 49
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/39 (48%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +1
Query: 154 DREYTLA-TIDPFGKPTLSAHPARFSPEDKYSRHRIIIK 267
D YTL+ T GKPT++ HPAR+SP+D+Y ++R +I+
Sbjct: 11 DNLYTLSETCSSCGKPTITPHPARYSPDDRYGKYRRMIR 49
>UniRef50_A6UUW5 Cluster: Nucleolar RNA-binding protein Nop10p; n=1;
Methanococcus aeolicus Nankai-3|Rep: Nucleolar
RNA-binding protein Nop10p - Methanococcus aeolicus
Nankai-3
Length = 51
Score = 41.5 bits (93), Expect = 0.017
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 157 REYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKK 270
+ YTL TI G+ T++ P R+SP DKY ++R ++KK
Sbjct: 10 KNYTLNTICQCGEKTITVKPPRYSPTDKYGKYRRMLKK 47
>UniRef50_Q97Z78 Cluster: Ribosome biogenesis protein Nop10; n=2;
Sulfolobus|Rep: Ribosome biogenesis protein Nop10 -
Sulfolobus solfataricus
Length = 56
Score = 40.7 bits (91), Expect = 0.029
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 154 DREYTLA-TIDPFGKPTLSAHPARFSPEDKYSRHRIIIKK 270
D YT T G T+ HP+RFSPEDKY ++RI +KK
Sbjct: 11 DNIYTFKDTCQICGSKTVIPHPSRFSPEDKYVKYRIELKK 50
>UniRef50_Q8U1R4 Cluster: Ribosome biogenesis protein Nop10; n=7;
Archaea|Rep: Ribosome biogenesis protein Nop10 -
Pyrococcus furiosus
Length = 60
Score = 36.3 bits (80), Expect = 0.63
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 163 YTLATIDPF-GKPTLSAHPARFSPEDKYSRHR 255
YTL + P G+ T AHP RFSPED Y +R
Sbjct: 14 YTLKEVCPVCGEKTKVAHPPRFSPEDPYGEYR 45
>UniRef50_A0B683 Cluster: Nucleolar RNA-binding protein Nop10p; n=1;
Methanosaeta thermophila PT|Rep: Nucleolar RNA-binding
protein Nop10p - Methanosaeta thermophila (strain DSM
6194 / PT) (Methanothrixthermophila (strain DSM 6194 /
PT))
Length = 60
Score = 35.5 bits (78), Expect = 1.1
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 157 REYTLATIDP-FGKPTLSAHPARFSPEDKYSRHR 255
R YTL P G T PARFSPED+Y R+R
Sbjct: 13 RLYTLKETCPRCGSHTTGTKPARFSPEDRYGRYR 46
>UniRef50_Q8TT00 Cluster: Ribosome biogenesis protein Nop10; n=7;
Euryarchaeota|Rep: Ribosome biogenesis protein Nop10 -
Methanosarcina acetivorans
Length = 51
Score = 35.5 bits (78), Expect = 1.1
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 163 YTLATIDPF-GKPTLSAHPARFSPEDKYSRHRIIIKK 270
YTL P G TL A PARFSP+D Y ++R + KK
Sbjct: 14 YTLREKCPVCGGVTLPAIPARFSPQDPYGKYRRLAKK 50
>UniRef50_Q3YAJ1 Cluster: Nucleolar protein family A, member 3; n=2;
Deuterostomia|Rep: Nucleolar protein family A, member 3
- Macaca mulatta (Rhesus macaque)
Length = 25
Score = 35.1 bits (77), Expect = 1.5
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +1
Query: 238 KYSRHRIIIKKRFGLLLTQQPEPI 309
KY R RI IKKRF + +TQQP P+
Sbjct: 1 KYFRPRIPIKKRFKVFMTQQPRPV 24
>UniRef50_Q8ZTY6 Cluster: Ribosome biogenesis protein Nop10; n=4;
Archaea|Rep: Ribosome biogenesis protein Nop10 -
Pyrobaculum aerophilum
Length = 72
Score = 35.1 bits (77), Expect = 1.5
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 211 HPARFSPEDKYSRHRIIIKKRFGLL 285
HP +FSPEDKY ++RI+ K G L
Sbjct: 32 HPPKFSPEDKYQKYRILQKLLMGKL 56
>UniRef50_Q05E71 Cluster: Small nucleolar RNP protein Nop10p; n=3;
Desulfurococcaceae|Rep: Small nucleolar RNP protein
Nop10p - Aeropyrum pernix
Length = 58
Score = 34.7 bits (76), Expect = 1.9
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 190 GKPTLSAHPARFSPEDKYSRHRIIIKKRFGLL 285
G P HP RFSP++++ ++R ++K+ GL+
Sbjct: 25 GGPVAVPHPPRFSPDNRFIKYRYELQKKLGLI 56
>UniRef50_Q8TY85 Cluster: Ribosome biogenesis protein Nop10; n=2;
Euryarchaeota|Rep: Ribosome biogenesis protein Nop10 -
Methanopyrus kandleri
Length = 66
Score = 33.1 bits (72), Expect = 5.9
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 211 HPARFSPEDKYSRHRIIIKKR 273
HP RFSPED Y ++R +KKR
Sbjct: 32 HPHRFSPEDPYGKYRRKLKKR 52
>UniRef50_Q96RL7 Cluster: Vacuolar protein sorting-associated
protein 13A; n=27; Deuterostomia|Rep: Vacuolar protein
sorting-associated protein 13A - Homo sapiens (Human)
Length = 3174
Score = 32.7 bits (71), Expect = 7.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 540 PYKLSPFDLAP*HHSKSWWQYSSHSTVRREVC 635
PY+ D+ HH++ WW Y+ H + VC
Sbjct: 313 PYRKFKPDVPLHHHAREWWAYAIHGVLEVNVC 344
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,702,580
Number of Sequences: 1657284
Number of extensions: 10922872
Number of successful extensions: 21157
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21156
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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