Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d12
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,495...    29   3.1  
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    29   3.1  
12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264...    28   5.5  
01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600...    28   7.2  

>09_02_0146 +
           4953007-4953297,4954105-4954341,4954592-4954669,
           4954991-4955167,4955705-4955761,4955988-4956174,
           4956910-4957055,4957213-4957395,4957860-4957970,
           4959386-4959505,4959596-4959740,4960001-4960164,
           4960816-4960902,4961062-4961390,4963426-4963507,
           4963616-4963746,4963976-4964225,4965112-4965393,
           4966780-4966986
          Length = 1087

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -3

Query: 438 RAFVFCCMLYKSCVL*ILKIIVKMYQNLDHFGNFQCKSI--FILMNRFRLLCKQQAKSLL 265
           RAF+F C +    VL  L  +V   +     G F   ++  +I+ N F +L    +K +L
Sbjct: 702 RAFMFLCFIP---VLLFLAFLVFTREQNPPLGTFLLVTMMCYIVANGFTILLILSSKLIL 758

Query: 264 DYYSVS*VFVFRRKTSW 214
              ++  VF+ RR  SW
Sbjct: 759 YVAAILHVFIKRRWQSW 775


>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -3

Query: 423 CCMLYKSCVL*ILKIIVKMYQNLDHFGNFQCKSIFILMNRFRLLCKQQAKSLLDYY 256
           CC      +  +L+++  +Y  L  +   QCK        F  +C   A  LLD +
Sbjct: 87  CCDFCGEPLRFVLQVVFHLYDKLQVYAPIQCKETAYHRTLFVFMCPSMACLLLDQH 142


>12_02_0910 +
           24225180-24225415,24225523-24225678,24226387-24226450,
           24226738-24226947,24227678-24227866,24228044-24228342,
           24228575-24228851,24229045-24229317,24230316-24230549,
           24230707-24230856
          Length = 695

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +1

Query: 241 YSRHRIIIKKRFGLLLTQQPEPIH*NKY*FALKITKMV*ILIHFNNYFQNLKHTGFI*HT 420
           Y  ++ I  KR    +T +P P H      A+ +T  V +    + +F+    + ++ HT
Sbjct: 151 YYEYKYISGKRLEYFMTSKPLPQHFTVLVRAIPVTNGVSVSDAVDKFFKEYHSSTYLSHT 210

Query: 421 TEHKSSYKR 447
             H++   R
Sbjct: 211 VVHQTGKLR 219


>01_01_0774 -
           6004040-6004371,6004634-6005215,6005391-6005657,
           6005845-6006163
          Length = 499

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 585 WNDVKE-QGQMETTCKGPMYQWGRLRLP 505
           W DV   + QMET C+  +  W  ++LP
Sbjct: 359 WGDVDSIREQMETYCRNGLQPWSPIKLP 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,236,636
Number of Sequences: 37544
Number of extensions: 275529
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)