Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d12
         (641 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063023-1|AAH63023.1|   64|Homo sapiens NOLA3 protein protein.       103   4e-22
BC008886-1|AAH08886.1|   64|Homo sapiens nucleolar protein famil...   103   4e-22
AB043104-1|BAA96133.1|   64|Homo sapiens Nop10p protein.              103   4e-22
AB043103-1|BAA96107.1|   64|Homo sapiens Nop10p protein.              103   4e-22
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin...    33   1.1  
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin...    33   1.1  
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin...    33   1.1  
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin...    33   1.1  
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin...    33   1.1  
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin...    33   1.1  
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.           33   1.1  
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.           33   1.1  
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p...    33   1.1  
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.              33   1.1  

>BC063023-1|AAH63023.1|   64|Homo sapiens NOLA3 protein protein.
          Length = 64

 Score =  103 bits (248), Expect = 4e-22
 Identities = 44/63 (69%), Positives = 53/63 (84%)
 Frame = +1

Query: 121 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 300
           M+L+YYLN++GDR YTL   DP G+ T SAHPARFSP+DKYSRHRI IKKRF +L+TQQP
Sbjct: 1   MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 301 EPI 309
            P+
Sbjct: 61  RPV 63


>BC008886-1|AAH08886.1|   64|Homo sapiens nucleolar protein family
           A, member 3 (H/ACA small nucleolar RNPs) protein.
          Length = 64

 Score =  103 bits (248), Expect = 4e-22
 Identities = 44/63 (69%), Positives = 53/63 (84%)
 Frame = +1

Query: 121 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 300
           M+L+YYLN++GDR YTL   DP G+ T SAHPARFSP+DKYSRHRI IKKRF +L+TQQP
Sbjct: 1   MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 301 EPI 309
            P+
Sbjct: 61  RPV 63


>AB043104-1|BAA96133.1|   64|Homo sapiens Nop10p protein.
          Length = 64

 Score =  103 bits (248), Expect = 4e-22
 Identities = 44/63 (69%), Positives = 53/63 (84%)
 Frame = +1

Query: 121 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 300
           M+L+YYLN++GDR YTL   DP G+ T SAHPARFSP+DKYSRHRI IKKRF +L+TQQP
Sbjct: 1   MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 301 EPI 309
            P+
Sbjct: 61  RPV 63


>AB043103-1|BAA96107.1|   64|Homo sapiens Nop10p protein.
          Length = 64

 Score =  103 bits (248), Expect = 4e-22
 Identities = 44/63 (69%), Positives = 53/63 (84%)
 Frame = +1

Query: 121 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 300
           M+L+YYLN++GDR YTL   DP G+ T SAHPARFSP+DKYSRHRI IKKRF +L+TQQP
Sbjct: 1   MFLQYYLNEQGDRVYTLKKFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQP 60

Query: 301 EPI 309
            P+
Sbjct: 61  RPV 63


>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting
           13 homolog A (S. cerevisiae) protein.
          Length = 3174

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 PYKLSPFDLAP*HHSKSWWQYSSHSTVRREVC 635
           PY+    D+   HH++ WW Y+ H  +   VC
Sbjct: 313 PYRKFKPDVPLHHHAREWWAYAIHGVLEVNVC 344


>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting
           13 homolog A (S. cerevisiae) protein.
          Length = 3095

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 PYKLSPFDLAP*HHSKSWWQYSSHSTVRREVC 635
           PY+    D+   HH++ WW Y+ H  +   VC
Sbjct: 313 PYRKFKPDVPLHHHAREWWAYAIHGVLEVNVC 344


>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting
           13 homolog A (S. cerevisiae) protein.
          Length = 3174

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 PYKLSPFDLAP*HHSKSWWQYSSHSTVRREVC 635
           PY+    D+   HH++ WW Y+ H  +   VC
Sbjct: 313 PYRKFKPDVPLHHHAREWWAYAIHGVLEVNVC 344


>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting
           13 homolog A (S. cerevisiae) protein.
          Length = 3095

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 PYKLSPFDLAP*HHSKSWWQYSSHSTVRREVC 635
           PY+    D+   HH++ WW Y+ H  +   VC
Sbjct: 313 PYRKFKPDVPLHHHAREWWAYAIHGVLEVNVC 344


>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting
           13 homolog A (S. cerevisiae) protein.
          Length = 3174

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 PYKLSPFDLAP*HHSKSWWQYSSHSTVRREVC 635
           PY+    D+   HH++ WW Y+ H  +   VC
Sbjct: 313 PYRKFKPDVPLHHHAREWWAYAIHGVLEVNVC 344


>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting
           13 homolog A (S. cerevisiae) protein.
          Length = 3095

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 PYKLSPFDLAP*HHSKSWWQYSSHSTVRREVC 635
           PY+    D+   HH++ WW Y+ H  +   VC
Sbjct: 313 PYRKFKPDVPLHHHAREWWAYAIHGVLEVNVC 344


>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
          Length = 3069

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 PYKLSPFDLAP*HHSKSWWQYSSHSTVRREVC 635
           PY+    D+   HH++ WW Y+ H  +   VC
Sbjct: 313 PYRKFKPDVPLHHHAREWWAYAIHGVLEVNVC 344


>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
          Length = 3135

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 PYKLSPFDLAP*HHSKSWWQYSSHSTVRREVC 635
           PY+    D+   HH++ WW Y+ H  +   VC
Sbjct: 313 PYRKFKPDVPLHHHAREWWAYAIHGVLEVNVC 344


>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
           protein.
          Length = 3174

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 PYKLSPFDLAP*HHSKSWWQYSSHSTVRREVC 635
           PY+    D+   HH++ WW Y+ H  +   VC
Sbjct: 313 PYRKFKPDVPLHHHAREWWAYAIHGVLEVNVC 344


>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
          Length = 3095

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 PYKLSPFDLAP*HHSKSWWQYSSHSTVRREVC 635
           PY+    D+   HH++ WW Y+ H  +   VC
Sbjct: 313 PYRKFKPDVPLHHHAREWWAYAIHGVLEVNVC 344


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,289,464
Number of Sequences: 237096
Number of extensions: 1706363
Number of successful extensions: 2307
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2307
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)