Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d11
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   253   6e-68
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    29   3.1  
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    28   5.5  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   5.5  
U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical ...    27   7.2  
Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    27   9.5  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  253 bits (620), Expect = 6e-68
 Identities = 116/158 (73%), Positives = 135/158 (85%)
 Frame = +2

Query: 41  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQE 400
           FPMKQG+LTN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  E
Sbjct: 61  FPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGE 120

Query: 401 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 514
           I GLTD  +PR+LGPKRASKIRKLFNL+K DDV +YV+
Sbjct: 121 IEGLTDSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVI 158


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 59  YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 217
           Y   G  ++FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+
Sbjct: 6   YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -1

Query: 565 MSGFSVFFSFLSWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNF-LGT 389
           +S F+  F +++W  AF D       F  V  +  F        + YIS+S    + +  
Sbjct: 33  VSSFNKSFGYITWNQAFGDALQSTTVFTLVVPMVFFDLEVLKANSNYISLSMLLGYDISV 92

Query: 388 LAH 380
           L+H
Sbjct: 93  LSH 95


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 74  CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 217
           C K F+   + ++    E+++  E E  Q  D W G  LR  G  DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319


>U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical
           protein ZK328.4 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 395 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSK-EDDVRRYVVKRVLPAKEGKENAKPRHK 568
           Q  P + D N   R  PK   K  K+ +LS  E+D +  V     P+KE KE  K R K
Sbjct: 109 QLYPEMFDSNQKPRQKPKEVKKALKVESLSDYENDDKENVPPCGKPSKE-KEEKKQRTK 166


>AC024796-3|AAK29895.4| 1161|Caenorhabditis elegans Hypothetical
            protein Y48G1C.5 protein.
          Length = 1161

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 365  LALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 514
            L L   +K  QE+        P  +GPK A +IR L  L  + +   +VV
Sbjct: 1010 LLLTFGKKRTQEVTHYQYTGWPEHMGPKDAEEIRYLLKLVTDSERPVFVV 1059


>Z81119-1|CAB03331.1|  363|Caenorhabditis elegans Hypothetical
           protein T10H4.2 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = +3

Query: 252 AVFVF*CQRATHVTDRA-----AMERENVNQFVDVLLTPISRSWLLLLCARVPRKFLD*L 416
           A+  F C+   HVT  +      +E  +V++ + V+   I  S+  ++ + +   F    
Sbjct: 58  AIMYFWCKPNAHVTQTSFTIFTILENSHVSKDIGVIAVTIWCSFYAMMLSLLSIHFF--- 114

Query: 417 MEMYPAV*VPNVLPKSVSCSTLAKKMMYVVMSSN 518
              Y +V  P +L K  SC  + K  +Y++  S+
Sbjct: 115 -YRYTSVTAPILLMKRFSCRYIFKYTLYILTFSS 147


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 191 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 54
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 191 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 54
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 191 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 54
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 391 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,943
Number of Sequences: 27780
Number of extensions: 308925
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)