Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d05
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1277 + 28918140-28918279,28919552-28919761,28920179-289203...    29   2.6  
03_06_0535 + 34571718-34571918,34572341-34572502,34572904-345729...    29   2.6  
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468...    27   6.0  
09_06_0249 - 21853325-21853484,21853523-21853902,21854012-21854185     27   7.9  

>06_03_1277 +
           28918140-28918279,28919552-28919761,28920179-28920374,
           28920459-28920853,28921024-28921119,28921330-28921402,
           28921650-28921935,28923824-28923946,28924123-28924404,
           28924513-28924928
          Length = 738

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 398 DTEHPPTYNVNAKTRLVSGYENSRPININLRSITPS-LNGTR 276
           D EH    N+   T   S     RP ++N+ SIT S L GT+
Sbjct: 614 DVEHSEVSNITGSTCSSSSKVQQRPYDLNIPSITISQLRGTQ 655


>03_06_0535 +
           34571718-34571918,34572341-34572502,34572904-34572945,
           34573097-34573246
          Length = 184

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 189 KSQRRSVLVVCK*ISIKARRANA-ADHVRSSCPVQGRCYRPQINIYR 326
           +++RR+ LVV   + +   +A+  A HVR    V G   RP+++++R
Sbjct: 35  QARRRASLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFR 81


>01_06_1783 +
           39845998-39846174,39846260-39846534,39846758-39846891,
           39846992-39847116,39847312-39847494,39847610-39847644,
           39847756-39847912,39847936-39848049,39848143-39848235,
           39848316-39848455,39848606-39848676,39848759-39848839,
           39851475-39851954,39852110-39852387,39853346-39854143
          Length = 1046

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
 Frame = +1

Query: 172 CVRVTTNPNGAVYLLYVNKSR*RR-------GARMQLITYAPRVPFKDGVID-LRLIFIG 327
           C +  T PN  + ++ V++S  R+       GA++ ++ YAP  P  DG I  L L+ +G
Sbjct: 162 CTQNDTVPNIGIPVVMVSQSAGRKILSGMDGGAKVDILMYAPEKPSFDGAIPFLWLMAVG 221


>09_06_0249 - 21853325-21853484,21853523-21853902,21854012-21854185
          Length = 237

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 266 VISCIRAPRLYRDLFT-YNKYTAPLGFVVTRTQAELQVWHILSVRKTFEAKSTRS 105
           V S  R PRL+  L    ++    LGF+ +    EL V H+L++R   +  ST S
Sbjct: 113 VESLERGPRLHLSLIVEVSRADRVLGFICSAWHDELVVRHVLTLRDA-DGSSTSS 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,881,649
Number of Sequences: 37544
Number of extensions: 230556
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)