Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13d05
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81581-13|CAE17944.1| 166|Caenorhabditis elegans Hypothetical p... 27 7.0
Z81143-8|CAE18064.1| 166|Caenorhabditis elegans Hypothetical pr... 27 7.0
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ... 27 7.0
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei... 27 7.0
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein. 27 7.0
AC024775-3|AAK68454.1| 580|Caenorhabditis elegans Hypothetical ... 27 7.0
Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical p... 27 9.3
Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical p... 27 9.3
Z70207-4|CAA94133.1| 337|Caenorhabditis elegans Hypothetical pr... 27 9.3
AC024777-4|AAF60561.3| 627|Caenorhabditis elegans Hypothetical ... 27 9.3
>Z49073-4|CAA88889.1| 1143|Caenorhabditis elegans Hypothetical protein
ZK970.5 protein.
Length = 1143
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 386 PPTYNVNAKTRLVSGYENSRPININLRSITP 294
PP VN K R ++ + +S N + RS++P
Sbjct: 1087 PPITKVNHKPRKIASFTDSELTNYSFRSVSP 1117
>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 247 ARMQLITYAPRVPFKDGVIDLRLIFI 324
A+ I Y+PR+ F + V D+ L+FI
Sbjct: 2536 AQGAFIEYSPRIAFPEQVSDIELLFI 2561
>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
W02B9.1b protein.
Length = 2920
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 247 ARMQLITYAPRVPFKDGVIDLRLIFI 324
A+ I Y+PR+ F + V D+ L+FI
Sbjct: 2536 AQGAFIEYSPRIAFPEQVSDIELLFI 2561
>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical
protein W02B9.1a protein.
Length = 1223
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 247 ARMQLITYAPRVPFKDGVIDLRLIFI 324
A+ I Y+PR+ F + V D+ L+FI
Sbjct: 839 AQGAFIEYSPRIAFPEQVSDIELLFI 864
>Z81581-13|CAE17944.1| 166|Caenorhabditis elegans Hypothetical
protein T02E1.8 protein.
Length = 166
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -3
Query: 267 RDQLHSRAAPLSRFIYIQQVHCAVGICGNAHTSRAASVAHFVCA 136
RD H R ++ F+ + C +G C N+ R + V A
Sbjct: 116 RDDSHDRKESVASFVEVCSTSCPIGECVNSSNLRGGIIFPVVFA 159
>Z81143-8|CAE18064.1| 166|Caenorhabditis elegans Hypothetical
protein T02E1.8 protein.
Length = 166
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = -3
Query: 267 RDQLHSRAAPLSRFIYIQQVHCAVGICGNAHTSRAASVAHFVCA 136
RD H R ++ F+ + C +G C N+ R + V A
Sbjct: 116 RDDSHDRKESVASFVEVCSTSCPIGECVNSSNLRGGIIFPVVFA 159
>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
protein W02B9.1b protein.
Length = 2920
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 247 ARMQLITYAPRVPFKDGVIDLRLIFI 324
A+ I Y+PR+ F + V D+ L+FI
Sbjct: 2536 AQGAFIEYSPRIAFPEQVSDIELLFI 2561
>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
protein.
Length = 2920
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 247 ARMQLITYAPRVPFKDGVIDLRLIFI 324
A+ I Y+PR+ F + V D+ L+FI
Sbjct: 2536 AQGAFIEYSPRIAFPEQVSDIELLFI 2561
>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
Length = 1223
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 247 ARMQLITYAPRVPFKDGVIDLRLIFI 324
A+ I Y+PR+ F + V D+ L+FI
Sbjct: 839 AQGAFIEYSPRIAFPEQVSDIELLFI 864
>AC024775-3|AAK68454.1| 580|Caenorhabditis elegans Hypothetical
protein Y41D4A.4 protein.
Length = 580
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 398 DTEHPPTYNVNAKTRLVSGYENSRPININL 309
+T +PP Y + RL GY + + +++NL
Sbjct: 137 NTVNPPAYKLYTHKRLDIGYNDKQVVDVNL 166
>Z83123-13|CAB05615.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 440 PSKTNAVIIYLFKLDTEHPPTYNVNAKTRLVSGYENSRPI 321
P+K +V + E PP++N T+ YE RP+
Sbjct: 566 PNKDYSVRVTAINFLGEGPPSWNATFTTKPAQIYEGDRPV 605
>Z83123-2|CAB05606.1| 1014|Caenorhabditis elegans Hypothetical
protein T04A11.3 protein.
Length = 1014
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 440 PSKTNAVIIYLFKLDTEHPPTYNVNAKTRLVSGYENSRPI 321
P+K +V + E PP++N T+ YE RP+
Sbjct: 387 PNKDYSVRVTAINFLGEGPPSWNATFTTKPAQIYEGDRPV 426
>Z70680-10|CAA94577.2| 1208|Caenorhabditis elegans Hypothetical
protein C25G4.10 protein.
Length = 1208
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 440 PSKTNAVIIYLFKLDTEHPPTYNVNAKTRLVSGYENSRPI 321
P+K +V + E PP++N T+ YE RP+
Sbjct: 566 PNKDYSVRVTAINFLGEGPPSWNATFTTKPAQIYEGDRPV 605
>Z70207-4|CAA94133.1| 337|Caenorhabditis elegans Hypothetical
protein F15A2.4 protein.
Length = 337
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 203 APLGFVVTRTQAELQVWHILSVRKTFEA 120
+P GFV T L ++++L R+TF+A
Sbjct: 287 SPYGFVYTIFDPLLTIYYVLPYRRTFKA 314
>AC024777-4|AAF60561.3| 627|Caenorhabditis elegans Hypothetical
protein Y42H9AR.4 protein.
Length = 627
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 386 PPTYNVNAKTRLVSGYENSRPININLRSITPSLNGTRGA 270
PP + ++G +NS+ ++I+ I+P+ NGTR A
Sbjct: 225 PPASRRKSLNTSLNG-KNSKKVSISNEVISPTTNGTRSA 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,369,367
Number of Sequences: 27780
Number of extensions: 209627
Number of successful extensions: 506
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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