Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d04
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   1.4  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   7.6  
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    25   7.6  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    25   10.0 

>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect(2) = 1.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 147 SEDENVLDFIIED 185
           SED+N+LDFI+ D
Sbjct: 624 SEDDNLLDFILRD 636



 Score = 21.0 bits (42), Expect(2) = 1.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 120 DIIVNAQINSEDEN 161
           ++IVN +I S DEN
Sbjct: 585 EVIVNGRIISHDEN 598


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +3

Query: 135 AQINSEDENVLDFIIEDEYYLKKR--GVGAHIIKVASSPQLRLLYKNAYSAVSCGNYSIL 308
           A +  +D   L F+ E + +  +    V  + +  +S   + LL+   +++++ G  ++ 
Sbjct: 582 AVVPHDDGINLSFMCESKVFDLESVDSVTCNYVLSSSKNPMNLLF-TLHNSITDGKLNVH 640

Query: 309 CNLVQNGEYDLNAIMFNCAEIKLN 380
           CN +  G Y L  I+F   +  L+
Sbjct: 641 CNDIIPGRYHLKTIVFKLKDSVLS 664


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 192 YLKKRGVGAHIIKVASSPQLRLLYKNAYSAVSCGNYS 302
           Y    G+ A +++  S  +L L++   Y+A   GN S
Sbjct: 62  YCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVS 98


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = +3

Query: 99  NTSNITPDIIVNAQINSEDENVLDFIIEDEYYLKKRGVGAHIIKVASSPQLR 254
           N  ++   ++    +   + NV DF+   + YL+ +G+   + +V+S+P +R
Sbjct: 60  NLISLHKSLVEIESLGGNEVNVSDFL---KSYLESKGLTVELQRVSSNPTVR 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,552
Number of Sequences: 5004
Number of extensions: 37530
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)