Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d03
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572...    29   2.3  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   3.0  
01_03_0009 + 11601394-11601666,11602486-11602683,11602809-116030...    28   5.3  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    27   9.3  
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    27   9.3  

>04_04_0201 -
           23555336-23556008,23556097-23556258,23556353-23557206,
           23557452-23557613,23558197-23558649,23559729-23559788,
           23559983-23560058,23561546-23561593,23561948-23562022,
           23562067-23562494
          Length = 996

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +2

Query: 416 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEK 595
           T S+ V+  AA      + +G + VT+ +S+ VD+      V+P+    A  + DE   K
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDELERK 717

Query: 596 ----TTVETLDVST 625
                +  T+D+ST
Sbjct: 718 RRKLDSCATMDMST 731


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 137 VQPVTITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 262
           V+ ++  + +F     NL   S   PLW  +P F D+G ++Y
Sbjct: 89  VKDISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130


>01_03_0009 +
           11601394-11601666,11602486-11602683,11602809-11603081,
           11603493-11603595,11603666-11603784,11604038-11604214,
           11604443-11605192
          Length = 630

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 47  MFSPRLFAVFIAFAGFTTVTALPARDKEVIVQPV-TITDDQFTFPWLNL 190
           +FS + F VF+  AGF+    L    K  I++P  TI  D+ T  +L L
Sbjct: 129 LFSKKPFPVFLELAGFSPEDVLIEEPKAGILKPAHTILRDECTKSFLVL 177


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 386 HDVFASQFFHTYSLPVNSSAADVTAELTSD 475
           HD F   + H  S+P+    A V AE++ D
Sbjct: 809 HDSFLRSYLHLTSMPLPCEGAAVPAEISKD 838


>02_05_0481 +
           29361542-29361669,29362091-29362341,29362820-29363002,
           29363099-29363206,29363583-29363697,29363781-29364819,
           29364904-29365014,29365268-29365326,29366601-29366763,
           29367162-29367435,29367530-29367680,29367766-29367877,
           29367978-29368143,29368261-29368331,29368474-29368565,
           29368721-29368883,29369134-29369205,29369236-29369263,
           29369519-29369910,29369991-29370106,29370201-29370498,
           29370820-29371139,29371332-29371590,29371985-29372302,
           29372423-29372527,29372648-29372776,29374001-29374381,
           29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +2

Query: 59  RLFAVFIAFAGFTTVTALPARDKEVIVQPVTITDDQFTFPWLNLSPF--SLFAPLWKL 226
           R F VF       TVT    R K + V   T    +F F  L LSP   S+ A +W L
Sbjct: 575 RAFVVFTLIFIIETVTVAVHRPKPIKVINATHEQFEFGFSILLLSPVVCSIMAFIWSL 632


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,679,577
Number of Sequences: 37544
Number of extensions: 275643
Number of successful extensions: 810
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)