Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d03
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   2.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.9  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 240 TKVGISFHRGANRLNGERFSH 178
           ++VG  +HR    +N ERF +
Sbjct: 199 SRVGTKYHRSGGLMNVERFPY 219


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 499 DQRKC**NEKYRARCTYCR 555
           +++ C  +++ R RC YCR
Sbjct: 148 EEKSCIIDKRQRNRCQYCR 166


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 499 DQRKC**NEKYRARCTYCR 555
           +++ C  +++ R RC YCR
Sbjct: 148 EEKSCIIDKRQRNRCQYCR 166


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 447 AALEFTGRL*VWKNWLANTSWSSSLASCDPW 355
           A L F+    V+K W+    W S   + D W
Sbjct: 117 AVLPFSATWEVFKVWIFGDLWCSIWLAVDVW 147


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 212 PLWKLIPT 235
           PLWKL+PT
Sbjct: 258 PLWKLLPT 265


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 131 LLCPGQAKPLPL 96
           LLCP Q  P+P+
Sbjct: 232 LLCPAQGFPVPV 243


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 473 DGYLVVTAPISENVDKTKNT 532
           +G + +   I++N+D  KNT
Sbjct: 408 NGSMEINQNIAQNIDHAKNT 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,343
Number of Sequences: 438
Number of extensions: 2868
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)