Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13d02
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0046 + 10114402-10114535,10116438-10117365 33 0.18
04_04_0873 - 28905240-28906061 32 0.43
10_08_0906 - 21472490-21472732,21472947-21473271,21473351-214735... 30 1.3
01_05_0722 + 24598426-24598649,24599113-24599219,24599319-245993... 30 1.7
10_08_0908 - 21476700-21476945,21477638-21477935,21478078-214783... 29 2.3
08_01_0607 + 5335542-5335806,5335998-5336371,5336854-5337384,533... 29 3.0
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 29 3.0
01_03_0316 + 14966231-14966570,14967596-14967738 29 3.0
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 28 5.2
06_03_1307 + 29218055-29218159,29218249-29218362,29218448-292186... 28 5.2
05_07_0160 + 28086804-28087499 28 5.2
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 28 6.9
10_08_0174 - 15424277-15424618,15425125-15425633,15426004-154260... 27 9.2
03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135... 27 9.2
01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038 27 9.2
>04_03_0046 + 10114402-10114535,10116438-10117365
Length = 353
Score = 33.1 bits (72), Expect = 0.18
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 2/150 (1%)
Frame = +3
Query: 159 DFETRGLMPPVFTPLNDDLTINYAAIPGYAKYMAEAGFKCVLVGGTTGEHMSLNVADRKK 338
D + ++ V TP D + A + G + V+VGGTTGE ++ +
Sbjct: 50 DITSLRVITAVKTPYLPDGRFDLEAYDSLINMQIDGGAEGVIVGGTTGEGHLMSWDEHIM 109
Query: 339 VIEEWVKAGRSTGLHIQVQVGGAPLPDVQE-LAAFCQKNGVGSILTLP-ELYFKPSNVDE 512
+I V G ++V VG +E + A Q VG L Y+ ++++
Sbjct: 110 LIGHTVNC---FGAKVKV-VGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEG 165
Query: 513 LVSYVALVAGAAPKLPVLYYHIPSMTRVEI 602
L+S+ V P P + Y++PS T +I
Sbjct: 166 LISHFEAV---LPMGPTIIYNVPSRTGQDI 192
>04_04_0873 - 28905240-28906061
Length = 273
Score = 31.9 bits (69), Expect = 0.43
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Frame = +3
Query: 261 EAGFKCVLVGGTTGEHMSLNVADRKKVIEEWVKAGRSTGLHIQVQVGGAPLPDVQE-LAA 437
E G + V+VGGTTGE ++ + +I V G I+V VG +E + A
Sbjct: 4 EGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNC---FGTKIKV-VGNTGSNSTREAIHA 59
Query: 438 FCQKNGVGSILTLP-ELYFKPSNVDELVSYVALVAGAAPKLPVLYYHIPSMTRVEI 602
Q VG L Y+ ++V+ L+S+ V P P + Y++PS T +I
Sbjct: 60 TEQGFAVGMHAALHINPYYGKTSVEGLISHFEAV---LPMGPTIIYNVPSRTGQDI 112
>10_08_0906 -
21472490-21472732,21472947-21473271,21473351-21473598,
21473823-21474071
Length = 354
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 396 VGGAPLPDVQELAAFCQKNGVGSILTLPELYFKP-SNVDELVS 521
+G P+P+VQELA C NG +PE Y +P ++ +E++S
Sbjct: 7 IGSLPVPNVQELAKTC--NGPDE--HIPERYIRPEASSEEVIS 45
>01_05_0722 +
24598426-24598649,24599113-24599219,24599319-24599374,
24599469-24599675,24599757-24599963,24600037-24600123,
24600167-24600208,24600209-24600304,24600406-24600621,
24600693-24600875,24601014-24601241
Length = 550
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 261 EAGFKCVLVGGTTGEHMSLNVADRKKVIEEWVKAGRSTGLHIQVQVGGAPLP 416
+AG VGG G H+S D+ V +KA + G QV A LP
Sbjct: 55 DAGMSAAEVGGVVGSHLSETRFDQCPVSPLSLKAIKDAGYEKMTQVQEATLP 106
>10_08_0908 -
21476700-21476945,21477638-21477935,21478078-21478325,
21479319-21479573
Length = 348
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 396 VGGAPLPDVQELAAFCQKNGVGSILTLPELYFKPS-NVDELV 518
+G +P+VQELA C NG+ +PE Y +P + DE++
Sbjct: 7 IGSISVPNVQELAGTC--NGIDE--EIPERYIRPEVSSDEVI 44
>08_01_0607 +
5335542-5335806,5335998-5336371,5336854-5337384,
5338300-5338713
Length = 527
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Frame = +3
Query: 246 AKYMAEAGFKCVLVGGTTGEHMSLNVADRKKVIEEWVKAGRSTGLHIQVQ---VGGAPLP 416
A + E +++GG EH +R + + A + G+ + +
Sbjct: 84 ASLLTEERITVLVIGGGGREHALCYALNRSPSCDAVLCAPGNAGIAQSGDATCISDLDVS 143
Query: 417 DVQELAAFCQKNGVGSILTLPELYFKPSNVDELV 518
D + AFC K GVG ++ PE V++LV
Sbjct: 144 DSDAVIAFCCKRGVGMVVVGPEAPLVAGLVNDLV 177
>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
40479205-40480047,40480176-40480269,40480356-40481207,
40481367-40481437,40481750-40481821,40481977-40482019
Length = 1530
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 399 GGAPLPDVQELAAFCQKNGVGSILTLPELY 488
GGAPLP++ + + + +G+G + T +LY
Sbjct: 1103 GGAPLPNLDVVNSLARHHGIGQLETHGDLY 1132
>01_03_0316 + 14966231-14966570,14967596-14967738
Length = 160
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 356 ESGKEHWSSHTGTSRWCTTPRRAGIGGVLSKKWRWFDSNAT 478
+ G E T T W RR G+ +WRW D AT
Sbjct: 47 KGGLETMRPTTATVMWAVMRRRWDGAGLKVMEWRWRDETAT 87
>07_03_0539 -
19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 308 YVSKRSGQEESYRRMGESGKEHWSSHTGTSRWCTTPRR 421
Y++KRS E S R + W S G W TPRR
Sbjct: 216 YMNKRSRHEHSSRSSRTPARSDWDS--GRWEWEDTPRR 251
>06_03_1307 +
29218055-29218159,29218249-29218362,29218448-29218660,
29218967-29219457,29219653-29219752,29219835-29219894,
29220055-29220147,29220270-29220368,29220484-29220804
Length = 531
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 468 LTLPELYFKPSNVDELVSYVALVAGAAPKL 557
LTL ++ + P+N EL+S ++++ G KL
Sbjct: 62 LTLADMSYLPTNAQELLSNISILEGTISKL 91
>05_07_0160 + 28086804-28087499
Length = 231
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 402 GAPLPDVQELAAFCQKNG-VGSILTLPELYFKPSNVDELVSYVALVAGA 545
G+P P V A CQK+G GS+L + S+ D +V L +G+
Sbjct: 119 GSPAPAVSNSPARCQKSGSTGSVLRWRQRLIGRSHSDGKEKFVFLSSGS 167
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 358 FTHSSITFFLSATFRDICSPVVPPTSTHL 272
F S+ +L A FRD SP+ P T HL
Sbjct: 329 FVGMSLRTYLDAAFRDGKSPIDPSTLVHL 357
>10_08_0174 -
15424277-15424618,15425125-15425633,15426004-15426047,
15427097-15427100,15427646-15427672,15427885-15428371
Length = 470
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 GGSWLQMCTRWWYD-RRAYVSKRSGQEESYRRMGESGKE 370
G WL C +W D RR VS G S R GKE
Sbjct: 59 GDGWLHECAKWDADGRRLLVSNFFGAGVSELRAETKGKE 97
>03_02_0750 +
10909130-10909616,10912257-10912916,10913139-10913544,
10914376-10914757,10914918-10915679,10916106-10916165,
10916695-10917105
Length = 1055
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +2
Query: 257 GGSWLQMCTRWWYD-RRAYVSKRSGQEESYRRMGESGKE 370
G WL C +W D RR VS G S R GKE
Sbjct: 59 GDGWLHECAKWDADGRRLLVSNFFGAGVSELRAEAKGKE 97
>01_06_1648 - 38897268-38897480,38897816-38897884,38899712-38900038
Length = 202
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 257 GGSWLQMCTRWWYDRRAYVSK-RSGQEESYRRMGESGKEHWSSHTGTSRWC 406
G + L M T Y RR + G++E + + G W + + RWC
Sbjct: 21 GSTLLHMATVRQYSRRTPTGETHGGRQEKAQGIARPGPALWKAVPRSRRWC 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,330,607
Number of Sequences: 37544
Number of extensions: 416088
Number of successful extensions: 1231
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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