Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d02
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22057| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)                    29   3.1  
SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        28   7.1  
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)                       28   7.1  
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)               27   9.4  

>SB_22057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 288 GGTTGEHMSLNVADRKKVIEEWVKAGRS 371
           GG   +H+ L+ +D  + ++EW KAG S
Sbjct: 262 GGPGVQHIGLHTSDIARAMDEWTKAGVS 289


>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
          Length = 870

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -1

Query: 567 IAQAISVPRRLPGQRKTPVHRHCSV*SIVPVALESNQRHFFDRTPPIPARRGVVHHRLVP 388
           I + + + R +P +R  P+ R+  +   VP+      R ++     +P RR V   R VP
Sbjct: 500 IRRYVPIRRYVPIRRYVPIRRYVPIRRYVPIRCYWPIRRYWPIRRYVPIRRYVPIRRYVP 559

Query: 387 V 385
           +
Sbjct: 560 I 560


>SB_49880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 386 YVKTSAPSRFHPFFYNFLPVRYV*RHMLACRTTNEYTFEASFRHI 252
           YV   +    + F YN++  +Y  +  L C  T+  T+E   R I
Sbjct: 258 YVSNLSKVLMYDFHYNYIKEKYGDKARLLCTDTDSLTYETYRRRI 302


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 395  SRWCTTPRRAGIGGVLSKKWRWFDSNATGTILQTEQCR*TGVLRCPGSRRGTEIACAI 568
            S W    +  G G ++ ++  +  SN  G    T++C+   V  CP   + T++A AI
Sbjct: 2251 STWSPCMKTCGTGVMMRQRDCFTGSNCPGPRTDTKKCK---VQNCPTCSQPTDLAFAI 2305


>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
          Length = 381

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 296 DRRAYVSKRSGQEESYRRMGESGKEHWSSHTGTSRWCTTPR 418
           +RR    KR  +E S +R     +E  S H G S  CT  R
Sbjct: 334 ERRRDDRKRRSRERSPKRRSREREESRSRHRGRSNSCTIDR 374


>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +2

Query: 395 SRWCTTPRRAGIGGVLSKKWRWFDSNATGTILQTEQCR*TGVLRCPGSRRGTEIACAI 568
           S W    +  G G ++ ++  +  SN  G    T++C+   V  CP   + T++A AI
Sbjct: 229 STWSPCMKTCGTGVMMRQRDCFTGSNCPGPRTDTKKCK---VQNCPTCSQPTDLAFAI 283


>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 24.6 bits (51), Expect(2) = 8.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 194 HTAER*SHNQLCGYTWICQIYGGSWLQMCTRWWYDRRAYV 313
           H A +  H  +CG   + Q+  GS    CT    DRR YV
Sbjct: 29  HPAYQSCHVFVCGSN-LFQVPAGSHYGCCTGQIVDRRRYV 67



 Score = 21.4 bits (43), Expect(2) = 8.5
 Identities = 17/67 (25%), Positives = 23/67 (34%)
 Frame = +2

Query: 341 YRRMGESGKEHWSSHTGTSRWCTTPRRAGIGGVLSKKWRWFDSNATGTILQTEQCR*TGV 520
           +R  GE+     S  TG     ++  R   G  +S+ W     N  G      QC   G 
Sbjct: 98  WRCDGENDCRDGSDETGCGSCSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQCNRAGG 157

Query: 521 LRCPGSR 541
             C   R
Sbjct: 158 GWCGAGR 164


>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
          Length = 1249

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 290 WYDRRAY--VSKRSGQEESYRRMGESGKEHWSSHT--GTSRWCTTPRRAGIGGVLS 445
           W  R AY  +S+   Q+    ++  SGK+          SRW T  R +G GG+LS
Sbjct: 179 WVRRNAYKLISRHIPQDMCSSKVDFSGKDISKKLRVLDCSRWLTELRGSGYGGMLS 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,172,686
Number of Sequences: 59808
Number of extensions: 460568
Number of successful extensions: 1265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)