Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13d02
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006630-3|AAK68325.1|  257|Caenorhabditis elegans Hypothetical ...    31   0.51 
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL008866-1|CAA15509.3|  724|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory...    28   6.2  

>AC006630-3|AAK68325.1|  257|Caenorhabditis elegans Hypothetical
           protein F14H12.3 protein.
          Length = 257

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 484 SSGSVRIEPTPFF*QNAANSCTSGSGAPPTC-TCM*RPVLL 365
           + GSV  EP P   Q AA  CT+ +  PP C TC  +PV++
Sbjct: 174 TGGSVEQEPCP---QQAACPCTTCNQPPPPCNTCNTQPVVI 211


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical
           protein F22E10.2 protein.
          Length = 1324

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 395 SRWCTTPRRAGIGGVLSKKWRWFDSNATGTI 487
           SR  T  R   I  +L +   WFD N +GTI
Sbjct: 165 SRMMTVMRNRYISSILRQNAGWFDKNLSGTI 195


>AL008866-1|CAA15509.3|  724|Caenorhabditis elegans Hypothetical
           protein B0019.1 protein.
          Length = 724

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 305 AYVSKRSGQEESYRRMGESGKEHWSSHTGTSRWCTT 412
           AY    S Q  ++R  G SGK  ++S TG   W TT
Sbjct: 319 AYYFTMSFQRATWRLNGRSGKVIYTSATGPLVWLTT 354


>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical
           protein DH11.3 protein.
          Length = 1270

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 389 GTSRWCTTPRRAGIGGVLSKKWRWFDSNATGTI 487
           GTSR   + R+  +G VL +   W D +++G+I
Sbjct: 147 GTSRILDSIRKEFLGAVLRQDANWLDKHSSGSI 179


>U00033-13|AAC48300.1|  439|Caenorhabditis elegans Mechanosensory
           abnormality protein14 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 219 INYAAIPGYAKYMAEAGFKCVLVGGTTGEHMSLNVADR-KKVIEEWVKAG 365
           +NY  IPG    M++ GF    +GG  G     NV D   K++E  +K G
Sbjct: 83  MNYRQIPGTDIRMSKIGFGAAAIGGMFG-----NVEDSIIKIVETAIKQG 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,503,636
Number of Sequences: 27780
Number of extensions: 347159
Number of successful extensions: 918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)