Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c24
         (712 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z6E3 Cluster: Putative uncharacterized protein; n=1; ...    36   0.98 
UniRef50_Q8I1R4 Cluster: Putative uncharacterized protein PFD084...    35   1.7  
UniRef50_Q4H2K9 Cluster: Zinc finger protein; n=1; Ciona intesti...    34   4.0  
UniRef50_Q170A8 Cluster: Putative uncharacterized protein; n=1; ...    34   4.0  
UniRef50_O67021 Cluster: Putative uncharacterized protein; n=1; ...    33   6.9  
UniRef50_A5MYQ1 Cluster: Putative uncharacterized protein; n=2; ...    33   9.2  
UniRef50_A4VSI1 Cluster: Putative uncharacterized protein; n=8; ...    33   9.2  

>UniRef50_Q4Z6E3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 60

 Score = 35.9 bits (79), Expect = 0.98
 Identities = 19/37 (51%), Positives = 22/37 (59%)
 Frame = -2

Query: 135 PFIFYLYFILWSSF*ILTK*NYFYRFFVKITQKFVFI 25
           PF FYL+FI W SF I     YF  F+VKI   FV +
Sbjct: 14  PFYFYLFFIFWFSFFIFF---YFSFFYVKIIIIFVLL 47


>UniRef50_Q8I1R4 Cluster: Putative uncharacterized protein PFD0840w;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PFD0840w - Plasmodium falciparum
            (isolate 3D7)
          Length = 2031

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = -1

Query: 580  NKLNNLIKVTNNNKRTNRYKQKKID-ISSFPIKYVIFDGLNNISFHVYIRCFVS*MSTFD 404
            N + N+ K     K+ N +K  KI+ I S+   ++++  ++ +SF+ ++  F++    + 
Sbjct: 1829 NNMKNIEKKKEKRKKKNLFKSNKINFILSYKYNFIVYLNVDKVSFYYHMYMFINNHIDYY 1888

Query: 403  FHLFL 389
              LFL
Sbjct: 1889 IKLFL 1893


>UniRef50_Q4H2K9 Cluster: Zinc finger protein; n=1; Ciona
           intestinalis|Rep: Zinc finger protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 750

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 147 RQDKMSGESHLRNCNSKIKNTNQKCSKCNLNFTPADLFK-HLKIQHAVKQVNKNFDIVEI 323
           +Q    GE  L   N+   N   KC +C+L F   D+   H+K    + +V K F   E 
Sbjct: 309 KQSSYKGEGSL--VNNSTNNKQFKCDRCSLKFQQKDMLDIHVKCHTVLDKVYKCFHCGET 366

Query: 324 HR 329
           H+
Sbjct: 367 HK 368


>UniRef50_Q170A8 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 242

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +3

Query: 153 DKMSGESHLRNCNSKI--KNTNQKCSKCNLNFT-PADLFKHLKIQHAVKQVNKN 305
           DKM   S  R+ + +I  KN   KC  CN +F+  A L+KH+  +H  K  + +
Sbjct: 149 DKMFQTSAHRDSHMRIAHKNVEHKCDICNKSFSMRAQLWKHMNNEHGEKSASSS 202


>UniRef50_O67021 Cluster: Putative uncharacterized protein; n=1;
           Aquifex aeolicus|Rep: Putative uncharacterized protein -
           Aquifex aeolicus
          Length = 545

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +2

Query: 353 SGMIQAAIKLFYEKKVKIKSRHLRYKTTY 439
           SG I+ AIK+ YEK + +K R++ YKT Y
Sbjct: 232 SGRIEEAIKI-YEKLINLKPRNVNYKTEY 259


>UniRef50_A5MYQ1 Cluster: Putative uncharacterized protein; n=2;
           Clostridium kluyveri DSM 555|Rep: Putative
           uncharacterized protein - Clostridium kluyveri DSM 555
          Length = 72

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 180 RNCNSKIKNTNQKCSKCNLN-FTPADLFK 263
           R+    IKNT Q C +CN+N F+P  L+K
Sbjct: 44  RSSKKVIKNTAQSCDECNVNKFSPKGLYK 72


>UniRef50_A4VSI1 Cluster: Putative uncharacterized protein; n=8;
           Streptococcus|Rep: Putative uncharacterized protein -
           Streptococcus suis (strain 05ZYH33)
          Length = 380

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 4   HNYDSHIDKHKFLSNLNEESIKVVL-FGKDLKGGPKDKIQIKNKRRTFSGKIKCLVKVTF 180
           +NY+ HI  +   +NLN+ S + +  F + LK  PK +            KI  L+K  F
Sbjct: 92  NNYERHIKPYFINTNLNKLSYEHIFEFREYLKIKPKKQNDSSTLSHNTVNKIMILLKKIF 151

Query: 181 ETVIRK 198
           +T +RK
Sbjct: 152 DTGVRK 157


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,760,309
Number of Sequences: 1657284
Number of extensions: 9819448
Number of successful extensions: 27909
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 25771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27864
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)