Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c24
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0925 - 25992699-25992836,25992920-25993033,25993199-259933...    32   0.52 
10_08_0075 - 14676835-14677173,14677776-14678426,14678734-146789...    30   1.6  

>06_03_0925 -
           25992699-25992836,25992920-25993033,25993199-25993310,
           25993686-25993879,25994075-25994297,25994383-25994483,
           25995108-25995137,25995182-25995337
          Length = 355

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 216 KCSKCNLNFTPADLFKHLKIQHAVKQVNK 302
           KCSKCN +FT  D+F  L +    K+ ++
Sbjct: 105 KCSKCNKSFTSKDIFLDLTVTSGTKEYSE 133


>10_08_0075 -
           14676835-14677173,14677776-14678426,14678734-14678948,
           14679510-14679783,14680249-14680410
          Length = 546

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +3

Query: 144 FRQDKMSG--ESHLRNCNSKIKNTNQKCSKCNLNFTPADLFKHLKIQHAVKQVN---KNF 308
           F  D   G  +  L+  N+K    N +  +C  +F+PA  F    + + VK       +F
Sbjct: 248 FHADMFLGVIDRQLQELNNKFDEVNPELLRCMSSFSPAKSFSDFNVDNLVKLAKFYPNDF 307

Query: 309 DIVEIHR 329
           D+ E+++
Sbjct: 308 DVEEMNQ 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,527,960
Number of Sequences: 37544
Number of extensions: 227147
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)