Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c24
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    24   1.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   3.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   3.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   3.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   3.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.6  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 150 QDKMSGESHLRNCNSKIKNTNQKCSKCNLNFTPADL 257
           +D MS +  +      IKN  + CSK   N TP +L
Sbjct: 20  EDTMSKKMTIEEAKKTIKNLRKVCSK--KNDTPKEL 53


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -1

Query: 580 NKLNNLIKVTNNNKRTNRYKQKKIDISSFPIKYVIFDG 467
           N  NN      NN     YK   I+I   P+   ++ G
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYG 136


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -1

Query: 580 NKLNNLIKVTNNNKRTNRYKQKKIDISSFPIKYVIFDG 467
           N  NN      NN     YK   I+I   P+   ++ G
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYG 136


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 574 LNNLIKVTNNNKRTNRYKQKKIDISSFPIKYVIFDG 467
           LNN I   NN K+   Y    I+    P+   I+ G
Sbjct: 308 LNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIYCG 343


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 574 LNNLIKVTNNNKRTNRYKQKKIDISSFPIKYVIFDG 467
           LNN I   NN K+   Y    I+    P+   I+ G
Sbjct: 319 LNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIYCG 354


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 574 LNNLIKVTNNNKRTNRYKQKKIDISSFPIKYVIFDG 467
           LNN I   NN K+   Y    I+    P+   I+ G
Sbjct: 319 LNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIYCG 354


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -1

Query: 574 LNNLIKVTNNNKRTNRYKQKKIDISSFPIKYVIFDG 467
           LNN I   NN K+   Y    I+    P+   I+ G
Sbjct: 308 LNNTIHNNNNYKKLQYYNINYIEQIPVPVPIPIYCG 343


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 1   DHNYDSHIDKHKFLSNLNEESIKV 72
           D++  +++  H F S LN  S+K+
Sbjct: 374 DYSSQNYLTVHSFPSTLNIPSVKI 397


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 221 TFLISIFNFRITVSKVTFTRHFILPENVRRLFFICILS 108
           + L+S+  F + VSK+      +LP   + L F  I++
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMN 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,668
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)