Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c22
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    43   9e-06
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   0.65 
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    24   4.6  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    23   6.1  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    23   8.0  

>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 42.7 bits (96), Expect = 9e-06
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -3

Query: 272 LIIDLSFGHLMIEKDRFKVIKQILRCYSINRRSEQPLHFHITSFGE--KSRNDMSRHNGY 99
           +++D +F  LM +K+   + +Q+ RC+S NR +  P+    T+FG   K+R D       
Sbjct: 97  IVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELFATNFGGRLKTRQDFVLKGQQ 156

Query: 98  ENW 90
            NW
Sbjct: 157 NNW 159


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 0.65
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 45   KGHYLNKYKNKNSYIPVF 98
            K ++LN +++KN Y+P+F
Sbjct: 3515 KEYWLNLFRSKNIYVPIF 3532


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 188 INRRSEQPLHFHITSFG 138
           +  R+ +PLHFH+ + G
Sbjct: 279 VESRNNEPLHFHVDNNG 295


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1190

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 263  DLSFGHLMIEKDRFKVIKQILRCYSINRRSEQPLHFH 153
            ++ F  L+ ++DR   +KQ+L   +     +Q LH H
Sbjct: 1118 EVVFPDLVFDEDRLTPLKQLLIDSTTGFTVDQLLHLH 1154


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 24  NLAFIV*KGHYLNK--YKNKNSYIPVFIAIVSRHIISRFLT 140
           NL F++ +  YL K  +++K     +F A++ RH+ SR+ T
Sbjct: 74  NLPFLLVR--YLPKLEFESKKDTGLIFSALLRRHVASRYPT 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 992,523
Number of Sequences: 5004
Number of extensions: 16457
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)