Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c22
         (280 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69360-9|CAN86601.1|  296|Caenorhabditis elegans Hypothetical pr...    54   2e-08
Z69360-8|CAA93284.1|  297|Caenorhabditis elegans Hypothetical pr...    54   2e-08
L09634-2|AAA27966.1|  504|Caenorhabditis elegans Proteasome regu...    27   1.5  
Z49125-7|CAN99660.1|  717|Caenorhabditis elegans Hypothetical pr...    25   6.1  
Z49125-6|CAA88937.2|  776|Caenorhabditis elegans Hypothetical pr...    25   6.1  

>Z69360-9|CAN86601.1|  296|Caenorhabditis elegans Hypothetical
           protein F25H8.1b protein.
          Length = 296

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = -3

Query: 272 LIIDLSFGHLMIEKDRFKVIKQILRCYSINRRSEQPLHFHITSFGEKSRN--DMSRHN 105
           + +D+SF  LMIEKD+ + ++QI  CY+ NR S  P  FH+  F   SR   D + HN
Sbjct: 88  IALDMSFDDLMIEKDQKRTVQQIGWCYTANRHSPDPFQFHVVGFDGPSRKIYDGNEHN 145


>Z69360-8|CAA93284.1|  297|Caenorhabditis elegans Hypothetical
           protein F25H8.1a protein.
          Length = 297

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
 Frame = -3

Query: 272 LIIDLSFGHLMIEKDRFKVIKQILRCYSINRRSEQPLHFHITSFGEKSRN--DMSRHN 105
           + +D+SF  LMIEKD+ + ++QI  CY+ NR S  P  FH+  F   SR   D + HN
Sbjct: 89  IALDMSFDDLMIEKDQKRTVQQIGWCYTANRHSPDPFQFHVVGFDGPSRKIYDGNEHN 146


>L09634-2|AAA27966.1|  504|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 3 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 206 ILRCYSINRRSEQPLHF--HITSFGEKSRNDMSRHNGYE 96
           +LRCY INR+ +   H    +      S ND++R+  Y+
Sbjct: 222 LLRCYLINRQYQSAAHLVSKVAFPDNASNNDLARYMYYQ 260


>Z49125-7|CAN99660.1|  717|Caenorhabditis elegans Hypothetical
           protein C47G2.5b protein.
          Length = 717

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 215 IKQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHNGYENW 90
           ++ I+  Y++  R +    F+ +S     RND    N  E W
Sbjct: 500 LEDIIHLYNLKHRPQMQHDFNDSSVVSSIRNDSHGFNDSEEW 541


>Z49125-6|CAA88937.2|  776|Caenorhabditis elegans Hypothetical
           protein C47G2.5a protein.
          Length = 776

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -3

Query: 215 IKQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHNGYENW 90
           ++ I+  Y++  R +    F+ +S     RND    N  E W
Sbjct: 500 LEDIIHLYNLKHRPQMQHDFNDSSVVSSIRNDSHGFNDSEEW 541


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,432,012
Number of Sequences: 27780
Number of extensions: 92114
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)