Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c20
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    30   0.34 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    29   0.59 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.4  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   5.5  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   5.5  
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    25   9.6  
SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1 type|Schizosaccharom...    25   9.6  

>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
 Frame = +3

Query: 312 NVKAVDSA--CMRCRRSFAVYPAVTYLHCGHSCLCTDC-DETVNVDNTCPKCKSGIRY-K 479
           ++K +DS+  C+ C   F   P +T   C H+  C+ C  + +     CP C++  +  +
Sbjct: 19  SLKGLDSSLRCLICHEYFRA-PLIT--SCSHT-FCSFCIRDYLREHPMCPACRAPEQESR 74

Query: 480 LKYKTL*HVALRNGDFRVGLLVAGADFKFKSSFGIPKKVCYLPATLQKSTNASG 641
           L+  T+    L +  F+V   +    F+F     +PK V   P T+    +ASG
Sbjct: 75  LRKNTILEEILES--FKV---IRPTLFEFLKVENVPKPVLQAPETVIAQDSASG 123


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 306 ECNV--KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYK 479
           +CN+  + ++S  +R    F    ++ +L C  S   T+  + + ++  C KCK  +R++
Sbjct: 179 KCNLCYECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPIEGMCTKCKRVLRWR 238


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +1

Query: 436  WTIRVLNVKAALDIN*NTKLCNMLPYEMVISVLVYLSPAQILNLNLPLAYQK---KCAIC 606
            W I +L    A      T+  + +  E++ SVL +   +   + NL   Y K      +C
Sbjct: 1665 WAISILVFLCAYSNEQQTQAVDEIRREVLTSVLKFYKSSSSFSENLEAYYCKLLVLAELC 1724

Query: 607  QQLCKSQRTHQAA 645
             +LC +Q   Q A
Sbjct: 1725 YRLCDAQTVSQKA 1737


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +3

Query: 300 NTECNVKAVDSACMRCRRSFAVYPAVTYLH---CGHS-CLCTDCDETVNVDN-TCPKCKS 464
           + E  V      CM C +      A+T  +   CGH+ C          V+N +CP CK 
Sbjct: 180 SAETTVPQECGLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKH 239

Query: 465 GIRYKLKYKTL 497
            IR+ L  +T+
Sbjct: 240 RIRFALPDQTM 250


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 482  QFISNAAFTFRTRIVHVYRFVAIGAQTRMSAMQI 381
            Q++SN +   RT ++ +   V+   +T+MSA Q+
Sbjct: 996  QYLSNMSHEIRTPLIGITGMVSFLLETQMSAEQL 1029


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +3

Query: 264 LEIIKTDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDN 443
           +++IK D          ++  +  C  C     V P V+Y  C H  +  DC      + 
Sbjct: 769 IQVIKNDIEKKRQLLGTIQDSEKVCDNCEGLLDV-PFVSY-SCLH-LVHRDCA----TET 821

Query: 444 TCPKCKSG 467
            CPKCK+G
Sbjct: 822 VCPKCKAG 829


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 9  KTVLCCAYVVRR 44
          KT LCC+YV+R+
Sbjct: 63 KTKLCCSYVIRK 74


>SPAC4H3.01 |||DNAJ domain protein Caj1/Djp1
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 187 GTAARCSRCGATTDV*LTLRAFATKRWKSLRPTETCRSTQNAM*RLSTVHACV 345
           G   R S CGA  D+   LR   +   K   PTE      +A+  + T+ + V
Sbjct: 306 GKILRASWCGARYDIQGVLREACSNLLKKRVPTELRLKRAHALLEIGTIFSNV 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,143
Number of Sequences: 5004
Number of extensions: 52586
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)