Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13c19
(493 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 166 7e-42
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 163 9e-41
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 131 1e-35
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 29 2.0
01_06_0355 + 28657833-28660665,28660762-28661126 29 2.7
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 29 2.7
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 4.7
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 6.2
02_03_0347 - 17999780-18000592,18000656-18003019 27 8.2
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 166 bits (404), Expect = 7e-42
Identities = 77/115 (66%), Positives = 95/115 (82%), Gaps = 1/115 (0%)
Frame = +3
Query: 84 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 260
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 261 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 425
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 163 bits (395), Expect = 9e-41
Identities = 76/115 (66%), Positives = 94/115 (81%), Gaps = 1/115 (0%)
Frame = +3
Query: 84 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 260
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 261 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 425
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 131 bits (316), Expect(2) = 1e-35
Identities = 60/89 (67%), Positives = 75/89 (84%), Gaps = 1/89 (1%)
Frame = +3
Query: 84 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 260
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 261 GGGKSTGFALIYDTLDLAKKFEPKHRLAR 347
GGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 1e-35
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 348 HGLYEKKRPTRKQRKERKNRMKKVRG 425
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -3
Query: 215 LVHFGELLTDLGLADGWFSWM*DIANHLLARQQSVGHEFASANSR 81
LV FG+ +T+L ADG W +A+H + V F+ N+R
Sbjct: 5 LVLFGDSITELSFADG--GWGAALADHFARKADVVLRGFSGYNTR 47
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 244 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 65
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 278 WIRFDLRHTRSGQEVRTQAQVSSPRPVREEEAHA 379
W R +R + G E T AQ+ PRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -1
Query: 193 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 65
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 351 GLYEKKRPTRKQRKERKNRMKK 416
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>02_03_0347 - 17999780-18000592,18000656-18003019
Length = 1058
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 158 WM*DIANHLLARQQSVGHEFASANSRCSFTHFELFSIIRRLHARVSAKTR 9
W+ D+AN ++ QQ +G S + S T F RR R +A TR
Sbjct: 105 WLDDVANLVMTAQQRLGAGGRSFAPKASGTATTGFMSSRRRARRAAAVTR 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,800
Number of Sequences: 37544
Number of extensions: 295951
Number of successful extensions: 871
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -