Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13c19
(493 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5) 31 0.39
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4) 29 2.1
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 29 2.1
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13) 29 2.1
SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4) 28 3.6
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 28 4.8
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 27 6.4
SB_59688| Best HMM Match : K-box (HMM E-Value=0.25) 27 8.4
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 27 8.4
SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 27 8.4
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 230 YIGSNLVHFGELLTDLGLADGWFSWM*DIANHLLARQQSVGHEFASANS 84
+I N +F + DLG+A + + + +H L R Q+VGH FA S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336
>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
Length = 585
Score = 31.5 bits (68), Expect = 0.39
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +2
Query: 158 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGQEVRTQAQ 337
R+T++ DR A+ NV S V++R D ++ V+ ++ D R + SGQ+V ++
Sbjct: 281 RRTSQSNDR----AQGNVTVVSTAHVQVRADD-VQAMNVSGVKSDGRPSSSGQDVYDGSR 335
Query: 338 VSSPRPVREEEAHAQT 385
S+ P E AQT
Sbjct: 336 QSTHGPALPWEELAQT 351
>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
Length = 166
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 330 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 422
+H LA H +++RP+ R+ K R++K+R
Sbjct: 79 RHGLASHDKKKRERPSLVARERMKKRLRKIR 109
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 303 LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 419
LDL KHR RH EKK K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037
>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
Length = 417
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 330 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 422
+H LA H +++RP+ R+ K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408
>SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4)
Length = 361
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 281 IRFDLRHTRSGQEVRTQAQVSSPRPVREEEAH 376
I+ +H R VRT +QVS+ P++++ H
Sbjct: 269 IKVKPKHRRPPSRVRTSSQVSTEPPIKKDPTH 300
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -1
Query: 256 FVLKPNTNTTSGVTL---YILASFSRISVLLTVGFPGCKTSQT 137
F+ PN ++ TL ++ S R+ V+ +VG PGC S T
Sbjct: 904 FISIPNITISNTFTLSWWMLVQSVQRVYVMTSVGNPGCGASPT 946
>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 327 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 416
P+ L H L ++ R R+QR ER++R+K+
Sbjct: 21 PQQILFTHRLEQRYRVERRQRLERRHRVKR 50
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -1
Query: 253 VLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVM 104
V+ NT ++ +T +F I +++T C++S TI + NN + +
Sbjct: 137 VIINNTIISTKITTSTTTTFIIIIIIITTSSHHCRSSTTIVVTTNNTITI 186
>SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)
Length = 884
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 20 QRHVRVDAELLKIIQNE*RNSDYSHSQIHDQQIVGAQADGLRCLTSRKTNRQQDRDP 190
+ +R E I N N ++ I QA G+ CL R +RQQD P
Sbjct: 659 EAELREQIERKNIESNTESNKEFGSLAIRPTGSESPQARGVWCLPERPRDRQQDGLP 715
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.1 bits (57), Expect = 8.4
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Frame = +2
Query: 104 HDQQIVGAQA---DGLRCLTSRKTNRQQDRDP*EARQNVQGYSRCSVRI---RFQDKLRR 265
H++QI A D ++ L+ + Q R+ E R + +S+ +V F++K++
Sbjct: 722 HEEQIQALMAQHEDQVKALSQEYED--QIRELREERDISEKWSKSNVDAPYSEFENKMKE 779
Query: 266 WQVNWIRFDLRHTRSGQEVRTQAQVSSPRPVREEEAHAQ 382
+ ++ R R +E+RT +Q+S P E H +
Sbjct: 780 IKDHYEREIERLGAENEELRTSSQISEPSERSSAEKHVE 818
>SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 973
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 151 KTSQTICLRANNLLVMN-LRVRIVAVPSLILNYFQ*FGVYTH 29
K S + LR +NL + + RIV P ++Y + FG+Y H
Sbjct: 245 KRSPKMILRLHNLCWRHAMSCRIVPTPPKAISYRKLFGIYFH 286
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 318 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 422
KFEPKH+ + KKR +RK+ E + + + +R
Sbjct: 1060 KFEPKHK-KKGRSSSKKRHSRKKGHEEQQKKETIR 1093
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,133,293
Number of Sequences: 59808
Number of extensions: 344318
Number of successful extensions: 1069
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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