Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c19
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...   170   4e-43
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...   166   8e-42
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    29   1.3  
At5g26850.1 68418.m03203 expressed protein                             28   3.9  
At1g80680.1 68414.m09467 nucleoporin family protein contains Pfa...    28   3.9  
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ...    27   9.1  

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score =  170 bits (414), Expect = 4e-43
 Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
 Frame = +3

Query: 66  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 242
           M+E   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +FVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 243 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 422
            F+T+FGGGKS+GF LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 423 G 425
           G
Sbjct: 121 G 121


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score =  166 bits (403), Expect = 8e-42
 Identities = 79/121 (65%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
 Frame = +3

Query: 66  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 242
           M+E   TIRTR FMTNRLLARKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +F F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 243 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 422
            F+T+FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 423 G 425
           G
Sbjct: 121 G 121


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 225 DVVFVFGFKTNFGGGKSTGFALIYDT 302
           DV FV GF T+F  G   GFA+ + T
Sbjct: 251 DVGFVVGFVTSFAAGLDVGFAIDFAT 276



 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 234 FVFGFKTNFGGGKSTGFALIYDT 302
           FV GF T+F  G  TGF + +DT
Sbjct: 110 FVTGFATDFDVGFDTGFTIGFDT 132


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 105 MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 257
           M +++     ++ D++    P +SK E  + K+  + + TPD  F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753


>At1g80680.1 68414.m09467 nucleoporin family protein contains Pfam
           profile: PF04096 nucleoporin autopeptidase
          Length = 1046

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 452 GRTYFRFLGTTDLLHSVLTFFTLFARGPLLLVQAVAS*PVLG 327
           G  Y RFLG TD+    L     F R  +++    +S PV+G
Sbjct: 86  GYGYIRFLGNTDVRRLDLDHIVKFHRHEVIVYDDESSKPVVG 127


>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
           ribosomal protein L2 [Gossypium arboreum] GI:17933133;
           contains Pfam profile PF00181: Ribosomal Proteins L2,
           RNA binding domain
          Length = 307

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 289 KANPVD-LPPPKFVLKPNTNTTSGV 218
           K N ++   PP+ +L+P TNT SG+
Sbjct: 82  KMNTIEKFAPPRKILEPTTNTISGL 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,089,088
Number of Sequences: 28952
Number of extensions: 232624
Number of successful extensions: 692
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)