Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c18
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...   126   3e-30
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    52   5e-08
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    52   7e-08
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    28   0.93 
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy...    27   2.8  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   6.5  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    25   8.7  

>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score =  126 bits (303), Expect = 3e-30
 Identities = 62/161 (38%), Positives = 87/161 (54%), Gaps = 1/161 (0%)
 Frame = +3

Query: 63  MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 242
           MR+ TCYFCS  VYPGHGI FVRND K+FRFCRSKCH  F             AYRK  G
Sbjct: 1   MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60

Query: 243 KELSIDPSFEF-EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVE 419
           KE+  D +      RRNVP++Y+R +   T+ AMK+V ++  +R   +  +RL   R  E
Sbjct: 61  KEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKRVSQVHAKRERLFYKKRLAGKRAQE 120

Query: 420 WQRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIE 542
            Q   + + +++     P   ++  +  E   +  E  T+E
Sbjct: 121 LQEAQKLIAQNVPQFTEPEGEVETAEVQEPQIVSDEEYTME 161


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 38/142 (26%), Positives = 63/142 (44%)
 Frame = +3

Query: 63  MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 242
           M++E C F  S+VYPG G  FVR D K+FRF   K  + F              YR+   
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 243 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 422
           K +S + +   +KR    +K+ R +    ++ +K   E R +R       R    ++ + 
Sbjct: 61  KGISEEHA---KKRTRRTVKHQRGIVGANLDVIK---EKRNQRPEVRAAARAAALKQRKD 114

Query: 423 QRDVREVQRDISLIKSPAAGLK 488
           +R   E ++     KS A+  +
Sbjct: 115 KRAASESEKKAIKAKSAASSAR 136


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 29/95 (30%), Positives = 46/95 (48%)
 Frame = +3

Query: 63  MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 242
           M++E C F  S+VYPG G  FVR D K+FRF   K  + F              YR+   
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 243 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKK 347
           K +S + +   +KR    +K+ R +    ++ +K+
Sbjct: 61  KGISEEHA---KKRTRRTVKHQRGIVGANLDVIKE 92


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 19/91 (20%), Positives = 42/91 (46%)
 Frame = +3

Query: 273 FEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRD 452
           F   +  P K  +E   + I+A  K     +   N++++QR R+ R  E +   +    +
Sbjct: 87  FPSTQQQPPKTEKEKEKEPIQAKHK-----KNVENDFLLQRFRKVRIAEKKDSEQPSSHE 141

Query: 453 ISLIKSPAAGLKQRQALEATEMEVEPETIEV 545
           I L         Q+Q +E+ +++  P+ +++
Sbjct: 142 IHLTDDDDKTTLQKQMVESDQLKKNPQEVKL 172


>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 152

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +1

Query: 73  KHVISVHPGFILDTESNLSGMTAKFSD---SVVQNATQRLK 186
           KH++ V   F L +E  LS   AKF +    ++  A QRL+
Sbjct: 39  KHILKVQRHFNLISEDELSARQAKFEEIVKPILSKAFQRLE 79


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -2

Query: 428 SLPLYLSALSQSLHNIIITPSLSDLFHFLHSFDCFSPQF 312
           S+P +   +     NI++   L  ++++ +   C SP F
Sbjct: 43  SIPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPHF 81


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 351 EEIRQRRSNNYIMQRLRQGREVEWQR 428
           + IR+ +SN+ ++QRL QG E +  R
Sbjct: 168 QSIRKAKSNSGLIQRLLQGTEQDKAR 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,075
Number of Sequences: 5004
Number of extensions: 47115
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)