Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc13c18
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 145 2e-35
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 93 2e-19
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 57 1e-08
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 55 4e-08
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962... 55 5e-08
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 35 0.044
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093... 29 2.2
04_01_0518 - 6795833-6796450,6799940-6800164 29 2.9
03_01_0050 + 430744-431337,432131-432249,432539-433084,433177-43... 29 2.9
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 28 5.0
09_04_0167 + 15290059-15290188,15290779-15292070 28 6.7
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616... 27 8.8
07_01_0306 - 2188056-2188588,2188698-2188846,2189652-2189704 27 8.8
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 27 8.8
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 145 bits (352), Expect = 2e-35
Identities = 66/162 (40%), Positives = 103/162 (63%), Gaps = 2/162 (1%)
Frame = +3
Query: 63 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 242
MR+E C+FCSS VYPGHGIQFVRND KIFRFCRSKCH F AYR G
Sbjct: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRCLHG 60
Query: 243 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 422
K+++ D +FEFE++RN P +Y+R + +T++A+ + +IR R +I +R +QG+ +
Sbjct: 61 KDMTQDSTFEFERKRNRPERYDRNVTEQTLKAISLITKIRHERQKKHITERQKQGKTKQR 120
Query: 423 QRDVREVQRDISLI--KSPAAGLKQRQALEATEMEVEPETIE 542
+RD +E+++DI ++ K + K + ++ ++ + E +E
Sbjct: 121 ERDAKELEQDIQMLPKKVTLSTQKTKVVVKVSQQQTEENLME 162
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/136 (32%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Frame = +3
Query: 144 IFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAGKELSIDPSFEFEKRRNVPLKYNRELWT 323
IFRFCRSKCH F AYR GK+++ D +FEFE++RN P +Y+R +
Sbjct: 66 IFRFCRSKCHKNFKMKRNPRKVKWTKAYRCLHGKDMTQDSTFEFERKRNRPERYDRNVTA 125
Query: 324 KTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGL---KQR 494
+T++A+ + +IR R +I +R +QG+ + +RD +E+++DI ++ L K +
Sbjct: 126 QTLKAIPLITKIRHERHKKHITERQKQGKTKQRERDAKELEQDIQMLPKKDTMLSTQKTK 185
Query: 495 QALEATEMEVEPETIE 542
++ ++ + E +E
Sbjct: 186 VVVKVSQQQTEENLME 201
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/99 (30%), Positives = 48/99 (48%)
Frame = +3
Query: 51 ETNKMRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYR 230
E K+ E C F +++YPG GI+F+R D ++F F SKC F YR
Sbjct: 25 EALKVWTELCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYR 84
Query: 231 KTAGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKK 347
K K++ + ++RR Y+R + T+E ++K
Sbjct: 85 KQHKKDIHAEA--VKKRRRTTKKPYSRSIVGATLEVIQK 121
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/92 (30%), Positives = 44/92 (47%)
Frame = +3
Query: 72 ETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAGKEL 251
E C F ++YPG GI+F+R D ++F F SKC F YRK K++
Sbjct: 1016 ELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDI 1075
Query: 252 SIDPSFEFEKRRNVPLKYNRELWTKTIEAMKK 347
+ ++RR Y+R + T+E ++K
Sbjct: 1076 HAEA--VKKRRRTTKKPYSRSIVGATLEVIQK 1105
>05_05_0279 -
23794964-23795111,23795486-23795634,23796120-23796221,
23796309-23796384,23796578-23796588
Length = 161
Score = 54.8 bits (126), Expect = 5e-08
Identities = 27/95 (28%), Positives = 46/95 (48%)
Frame = +3
Query: 63 MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 242
++ E C F ++YPG GI+F+R D ++F F SKC F YRK
Sbjct: 3 LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62
Query: 243 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKK 347
K++ + ++RR Y+R + ++E ++K
Sbjct: 63 KDIHAEA--VKKRRRTTKKPYSRSIVGASLEVIQK 95
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 35.1 bits (77), Expect = 0.044
Identities = 23/94 (24%), Positives = 47/94 (50%)
Frame = +3
Query: 297 LKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPA 476
L+ ++W + +K+ E ++ S + QR Q E WQR R++++ + +K
Sbjct: 298 LRGEAKMWQRKTRKLKQGLETLKKVSTDKSKQRSEQDLEKMWQRKTRKLKQGLETLKKEC 357
Query: 477 AGLKQRQALEATEMEVEPETIEVVDAKGRKQIIE 578
A ++Q +E+E+E +I + + +Q IE
Sbjct: 358 ADKSKQQ----SELELE-LSISISERDSLRQEIE 386
>12_02_0693 -
22207582-22207620,22208421-22208597,22209258-22209347,
22210215-22210280,22210473-22210570,22210669-22210789,
22210875-22212477,22213332-22213915
Length = 925
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 333 EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQALEA 509
E +++ E+RQR +RL + RE+E QR+ R ++ ++R A EA
Sbjct: 526 ERLEREREMRQREEKEREQRRLEEERELEKQRERERAAR--QAVERATKEARERAAAEA 582
>04_01_0518 - 6795833-6796450,6799940-6800164
Length = 280
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 324 KTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLK-QRQA 500
+ IE KK EE+ + R I + R++ + V Q+D +++ G + +RQ
Sbjct: 184 RQIEEEKKKEEVERGRLQKEIKEGRESLRKLRLKLGVDVPQQDQEIVQQLERGRQGKRQT 243
Query: 501 LEATEMEVEPETIE 542
+E E++VE E +E
Sbjct: 244 IE--ELQVEHEQLE 255
>03_01_0050 +
430744-431337,432131-432249,432539-433084,433177-433483,
433605-433773,433861-433960,435805-436103,436796-436869,
437007-437442,437622-437650
Length = 890
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 428 RRARSPERHLFDKVTSGWSETATSFRSHRNG 520
RRARSPER L ++ W TA+S S R G
Sbjct: 88 RRARSPERALVRRIAREW--TASSRTSPRGG 116
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 543 LLLSRVPLPFLWLLKLVAVSDQPLVTLSKRCLSGLLARLFATLPL 409
L L F W LK+V + L L+K + +L L TLPL
Sbjct: 458 LFLHNFQQAFTWSLKIVTATKSALSVLTKPIMGPILEVLEFTLPL 502
>09_04_0167 + 15290059-15290188,15290779-15292070
Length = 473
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 428 RRARSPERHLFDKVTSGWSETATSFRSHRNGSGTRDNRSCGR*RQE 565
RRA HL + SG T R H G G +S GR R+E
Sbjct: 32 RRALQRRHHLRSRAESG--ATILELRHHGGGGGGGSGKSGGRSREE 75
>07_03_0697 +
20759176-20759817,20760592-20760708,20761422-20761696,
20761906-20762068,20762293-20762421,20762989-20763713,
20763853-20764081
Length = 759
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 231 KTAGKELSIDPSFEFE--KRRNVPLKYNRE--LWTKTIEAMKKVEEIRQRRSNN 380
+T G+++ I + E E +R + K N E +W K E MK+ + R+RRS +
Sbjct: 497 QTDGEDMEITFNTELEDLSKRILDRKVNNEKTVWEKHQEKMKEKRKSRKRRSKD 550
>07_01_0306 - 2188056-2188588,2188698-2188846,2189652-2189704
Length = 244
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +3
Query: 276 EKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVE 419
+K+RNV + LW ++ + VEEI + ++Q+++ +V+
Sbjct: 131 QKQRNVQKELEGNLWLQSFKQFTTVEEINELVQLGEMLQQIQLNPQVQ 178
>06_03_1208 - 28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 504 LKLVAVSDQPLVTLSKRCLSGLLARLFATLPLCPVS 397
L L +++Q ++S R LS +L + + LPLCP S
Sbjct: 966 LILNVIAEQHTDSISSRPLSSVLEPVISYLPLCPNS 1001
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,140
Number of Sequences: 37544
Number of extensions: 302817
Number of successful extensions: 927
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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