Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc13c18
         (609 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113325-1|AAM29330.1|  191|Drosophila melanogaster AT28833p pro...   229   3e-60
AE014297-1297|AAF54637.1|  191|Drosophila melanogaster CG6764-PA...   229   3e-60
AY071277-1|AAL48899.1|  155|Drosophila melanogaster RE30690p pro...    41   0.001
AE014134-2347|AAF53299.1|  155|Drosophila melanogaster CG9282-PA...    41   0.001
AY075529-1|AAL68336.1|  269|Drosophila melanogaster RH01238p pro...    36   0.033
AE014134-3134|AAF53830.1|  269|Drosophila melanogaster CG13077-P...    36   0.033
D89662-1|BAA19489.1|  569|Drosophila melanogaster myosin light c...    32   0.70 
AF255668-1|AAG01795.1|  577|Drosophila melanogaster Stretchin-ML...    32   0.70 
AE014298-2653|AAF48791.2| 1108|Drosophila melanogaster CG15373-P...    28   8.7  

>AY113325-1|AAM29330.1|  191|Drosophila melanogaster AT28833p
           protein.
          Length = 191

 Score =  229 bits (559), Expect = 3e-60
 Identities = 106/178 (59%), Positives = 140/178 (78%), Gaps = 6/178 (3%)
 Frame = +3

Query: 63  MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 242
           MRI+TCYFCSS++YPGHG+QFVRNDCK+F+FCR KCH AF             AYRK AG
Sbjct: 1   MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAG 60

Query: 243 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 422
           KEL+IDPSFEFEKRRNVP+KY+RE W K +EA+K+V EI+++R+++++M+RLR+GR+VE 
Sbjct: 61  KELAIDPSFEFEKRRNVPMKYSRETWQKGLEAIKRVTEIKEKRTSHFVMERLRKGRQVEI 120

Query: 423 QRDVREVQRDISLIKSPAAGLKQRQALEATE----ME--VEPETIEVVDAKGRKQIIE 578
           Q DV++VQR++SLI+SPAAGLKQR+A EA E    ME  +  E I  VDA+  ++ +E
Sbjct: 121 QMDVKDVQRNMSLIRSPAAGLKQRRAQEAAEEAALMEEDLPEEKITYVDARELEKKLE 178


>AE014297-1297|AAF54637.1|  191|Drosophila melanogaster CG6764-PA
           protein.
          Length = 191

 Score =  229 bits (559), Expect = 3e-60
 Identities = 106/178 (59%), Positives = 140/178 (78%), Gaps = 6/178 (3%)
 Frame = +3

Query: 63  MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 242
           MRI+TCYFCSS++YPGHG+QFVRNDCK+F+FCR KCH AF             AYRK AG
Sbjct: 1   MRIQTCYFCSSKIYPGHGVQFVRNDCKVFKFCRGKCHKAFKRKKNPRKVGWTKAYRKAAG 60

Query: 243 KELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGREVEW 422
           KEL+IDPSFEFEKRRNVP+KY+RE W K +EA+K+V EI+++R+++++M+RLR+GR+VE 
Sbjct: 61  KELAIDPSFEFEKRRNVPMKYSRETWQKGLEAIKRVTEIKEKRTSHFVMERLRKGRQVEI 120

Query: 423 QRDVREVQRDISLIKSPAAGLKQRQALEATE----ME--VEPETIEVVDAKGRKQIIE 578
           Q DV++VQR++SLI+SPAAGLKQR+A EA E    ME  +  E I  VDA+  ++ +E
Sbjct: 121 QMDVKDVQRNMSLIRSPAAGLKQRRAQEAAEEAALMEEDLPEEKITYVDARELEKKLE 178


>AY071277-1|AAL48899.1|  155|Drosophila melanogaster RE30690p
           protein.
          Length = 155

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = +3

Query: 63  MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 242
           M+I  C F   ++YPGHG   V+ D K F F   KC  ++              YR+   
Sbjct: 1   MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHR 60

Query: 243 KELSIDPSFEFEKRRNVPLKYNREL 317
           K +  + S   +KR     K+ R +
Sbjct: 61  KGIEEEAS---KKRTRRTQKFQRAI 82


>AE014134-2347|AAF53299.1|  155|Drosophila melanogaster CG9282-PA
           protein.
          Length = 155

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = +3

Query: 63  MRIETCYFCSSRVYPGHGIQFVRNDCKIFRFCRSKCHAAFXXXXXXXXXXXXXAYRKTAG 242
           M+I  C F   ++YPGHG   V+ D K F F   KC  ++              YR+   
Sbjct: 1   MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHR 60

Query: 243 KELSIDPSFEFEKRRNVPLKYNREL 317
           K +  + S   +KR     K+ R +
Sbjct: 61  KGIEEEAS---KKRTRRTQKFQRAI 82


>AY075529-1|AAL68336.1|  269|Drosophila melanogaster RH01238p
           protein.
          Length = 269

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -2

Query: 413 LSALSQSLHNIIITPSLSDLFHFLHSFDCFSPQFAIVFQGHISSLFKLKGWVYRQFLTRS 234
           L+AL  S    +ITP L+  FH    F CF       + G+ +  FK +     Q L + 
Sbjct: 182 LAALFSSRIKKLITPLLNKTFHNFLGFACFVIALVTQYYGYQTGYFKSRSETDFQILMKC 241

Query: 233 LT-VSFSPFSFTGILLLFKRC 174
           LT +S    S+  +  L+++C
Sbjct: 242 LTLISLVLSSYGPMKALYQKC 262


>AE014134-3134|AAF53830.1|  269|Drosophila melanogaster CG13077-PA
           protein.
          Length = 269

 Score = 36.3 bits (80), Expect = 0.033
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -2

Query: 413 LSALSQSLHNIIITPSLSDLFHFLHSFDCFSPQFAIVFQGHISSLFKLKGWVYRQFLTRS 234
           L+AL  S    +ITP L+  FH    F CF       + G+ +  FK +     Q L + 
Sbjct: 182 LAALFSSRIKKLITPLLNKTFHNFLGFACFVIALVTQYYGYQTGYFKSRSETDFQILMKC 241

Query: 233 LT-VSFSPFSFTGILLLFKRC 174
           LT +S    S+  +  L+++C
Sbjct: 242 LTLISLVLSSYGPMKALYQKC 262


>D89662-1|BAA19489.1|  569|Drosophila melanogaster myosin light
           chain kinase  isoform-III protein.
          Length = 569

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 232 RLRVRNCL*THPLSLKRDEMCP*NTIANCGLKQSKL*RKWKRSDREGVI 378
           RL  + CL +  LS + D+    N I    LK+  + RKW++  REG +
Sbjct: 489 RLTAQQCLASKWLSQRPDDSLSNNKICTDKLKKFIIRRKWQQRSREGAV 537


>AF255668-1|AAG01795.1|  577|Drosophila melanogaster Stretchin-MLCK
           protein.
          Length = 577

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 232 RLRVRNCL*THPLSLKRDEMCP*NTIANCGLKQSKL*RKWKRSDREGVI 378
           RL  + CL +  LS + D+    N I    LK+  + RKW++  REG +
Sbjct: 497 RLTAQQCLESKWLSQRPDDSLSNNKICTDKLKKFIIRRKWQQRSREGAV 545


>AE014298-2653|AAF48791.2| 1108|Drosophila melanogaster CG15373-PA
           protein.
          Length = 1108

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 333 EAMKKVEEIRQRRSNNYIMQRLRQGREVEWQRDVREVQRDISL 461
           E +KK+EE RQR+       + RQ +EV   R  R   +D  L
Sbjct: 8   EKLKKLEEARQRKKLEMEQAKHRQQQEVAENRQRRSQLKDSML 50


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,159,248
Number of Sequences: 53049
Number of extensions: 506523
Number of successful extensions: 1944
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1944
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)